Browse Element(s) Details


OsAffx.11698.1.S1_at

Description gb:NM_190562.1
DB_XREF= gi:34908207
GEN=P0406G08.19
TID=OsAffx.11698.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0406G08.19 (P0406G08.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6253011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62500Os.33529.1.S1_at11/111+36509312..36514823AFG3-like protein 2, putative, expressed
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein
LOC_Os01g62520Os.54691.1.S1_x_at2/111+36534712..36537496Zinc knuckle family protein
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62550OsAffx.2391.1.S1_at7/111+36543644..36545167hypothetical protein
LOC_Os01g62560OsAffx.21746.1.S1_at11/111+36546114..36547259expressed protein
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11698.1.S1_at--179--3111Chr01:36539496..36539520 (25 bp)
AATATCTCTGCTGATGGTTACGCCC
LOC_Os01g62530
OsAffx.11698.1.S1_at--510--3571Chr01:36539472..36539496 (25 bp)
CATAGCTCTGCTATTGAGGCCGTTT
LOC_Os01g62530
OsAffx.11698.1.S1_at--312--10771Chr01:36539459..36539483 (25 bp)
TTGAGGCCGTTTGCTGATCCTGATC
LOC_Os01g62530
OsAffx.11698.1.S1_at--559--8851Chr01:36539439..36539463 (25 bp)
TGATCCTGATCTGCTGCCTATGTTC
LOC_Os01g62530
OsAffx.11698.1.S1_at--734--4031Chr01:36539361..36539385 (25 bp)
CGTTGCTAGGTTTGTGCTTCATGAT
LOC_Os01g62530
OsAffx.11698.1.S1_at--649--5851Chr01:36539321..36539345 (25 bp)
GACCAGATTGGCCACATCATGTTGT
LOC_Os01g62530
OsAffx.11698.1.S1_at--45--7331Chr01:36539298..36539322 (25 bp)
GTGCTATATTGTCCCATATCTGGTG
LOC_Os01g62530
OsAffx.11698.1.S1_at--288--9471Chr01:36539280..36539304 (25 bp)
TCTGGTGATTAGCTTCTTTCTTCTT
LOC_Os01g62530
OsAffx.11698.1.S1_at--590--6611Chr01:36539240..36539264 (25 bp)
GTTGGCTTTGCTGGCGAAACCATTG
LOC_Os01g62530
OsAffx.11698.1.S1_at--722--7571Chr01:36539215..36539239 (25 bp)
GGGCTACGTTTTTATGGTGCATGAT
LOC_Os01g62530
OsAffx.11698.1.S1_at--171--6351Chr01:36539193..36539217 (25 bp)
GATGCTGTCCATAGCTGGATTGCTT
LOC_Os01g62530
Target Sequence 
AATATCTCTGCTGATGGTTACGCCCATAGCTCTGCTATTGAGGCCGTTTGCTGATCCTGATCCTGATCTGCTGCCTATGT
TCGTGGCCTTTCTTTCGGTTGTGGAGGGGGCTGCCATCTTGTCCTGGGCTGCTTTCGTTGCTAGGTTTGTGCTTCATGAT
GCCCTCCTGTCCGTTGACCAGATTGGCCACATCATGTTGTGCTATATTGTCCCATATCTGGTGATTAGCTTCTTTCTTCT
TCTGCTGCTGACTGGCGTTGGCTTTGCTGGCGAAACCATTGGGGCTACGTTTTTATGGTGCATGATGCTGTCCATAGCTG
GATTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis