Browse Element(s) Details


OsAffx.11744.1.S1_x_at

Description tigr:9629.m06504
TID=OsAffx.11744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitotic checkpoint protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6559011/11Galactosyltransferase family protein, expressed
LOC_Os05g352741/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11744.1.S1_x_at--909--1611Chr01:38400297..38400321 (25 bp)
AGCTGTCCTCCAAGACCAGGGTCTA
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--535--7632Chr01:38400345..38400369 (25 bp)
GGGACGCCGACTTCTACGTCAAGGT
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--355--7091Chr01:38400386..38400512 (25 bp)
GTCAACCTCGGGATGCTGACGAGCA
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--278--1531Chr01:38400509..38400533 (25 bp)
AGCAGGCTGGCCAAGTACAGGACAC
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--918--9931Chr01:38400545..38400569 (25 bp)
TACGTCGGCTGCATGAAGTCCGGAC
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--30--1151Chr01:38400561..38400585 (25 bp)
AGTCCGGACCTGTTCTGTCGCAGAA
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--1030--6091Chr01:38400683..38400707 (25 bp)
GAGTGAAGTACCACGAGCCGGAGTA
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--381--2271Chr01:38400758..38400782 (25 bp)
AAATCTACGCCGTTTCCAAGGATCT
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--822--6371Chr01:38400884..38400908 (25 bp)
GATCCTGCACAGGTTCGCAAACGAG
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--711--3351Chr01:38400980..38401126 (25 bp)
CACGCCGCCAGATTGCGAGTGGAAG
LOC_Os01g65590
OsAffx.11744.1.S1_x_at--1143--6311Chr01:38401198..38401222 (25 bp)
GATGAAGCACATCCACAGGGCCTGC
LOC_Os01g65590
Target Sequence 
AGCTGTCCTCCAAGACCAGGGTCTACTTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGAC
GACGTCCACGTCAACCTCGGGATGCTGACGAGCAGGCTGGCCAAGTACAGGACACGACCGAGGGTGTACGTCGGCTGCAT
GAAGTCCGGACCTGTTCTGTCGCAGAAGGGAGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACA
AGTACTTCCGCCACGCCACCGGCCAAATCTACGCCGTTTCCAAGGATCTCGCCGCCTACATCTCCATCAACCAGCCGATC
CTGCACAGGTTCGCAAACGAGGACGTCTCCCTCGGCGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGCAG
CATGTGCTGCGCCACGCCGCCAGATTGCGAGTGGAAGAAGCGAGCTGGGAACGTGTGCGTGGCGTCGTTCGATTGGTCGT
GCAGTGGGGTCTGCAAGTCAGTGGACAGGATGAAGCACATCCACAGGGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11744.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis