Browse Element(s) Details


OsAffx.11786.1.S1_at

Description tigr:9629.m06771
TID=OsAffx.11786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6821011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68150Os.9025.3.S1_at10/111+39943995..39947432retrotransposon protein, putative, unclassified, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11786.1.S1_at--1071--10591Chr01:39971014..39971038 (25 bp)
TTCTGCTTCGACACGGAGAGCTTGG
LOC_Os01g68210
OsAffx.11786.1.S1_at--446--10811Chr01:39970993..39971017 (25 bp)
TTGGAGTGGACCGACTACGGCTGCT
LOC_Os01g68210
OsAffx.11786.1.S1_at--108--9211Chr01:39970956..39970980 (25 bp)
TCCAGGGTCAGGGACACTACGACGC
LOC_Os01g68210
OsAffx.11786.1.S1_at--736--7691Chr01:39970824..39970848 (25 bp)
GGGTCCCGTCGTGCAAGATCGGCAA
LOC_Os01g68210
OsAffx.11786.1.S1_at--755--5171Chr01:39970803..39970827 (25 bp)
GCAAGGACGTCCTCTTCTGCAAGGA
LOC_Os01g68210
OsAffx.11786.1.S1_at--903--10591Chr01:39970789..39970813 (25 bp)
TTCTGCAAGGACAAGGAGCGGCACC
LOC_Os01g68210
OsAffx.11786.1.S1_at--803--7691Chr01:39970761..39970785 (25 bp)
GGGTCGCTCTCCACTACATGGGCAG
LOC_Os01g68210
OsAffx.11786.1.S1_at--1109--8631Chr01:39970743..39970767 (25 bp)
TGGGCAGCGACAGCAACTTCTGTCT
LOC_Os01g68210
OsAffx.11786.1.S1_at--1048--2051Chr01:39970728..39970752 (25 bp)
ACTTCTGTCTGCTCGAGTGCGTGGA
LOC_Os01g68210
OsAffx.11786.1.S1_at--505--1151Chr01:39970684..39970708 (25 bp)
AGTCGGCTCATGTACGTGCGGATGT
LOC_Os01g68210
OsAffx.11786.1.S1_at--983--3951Chr01:39970666..39970690 (25 bp)
CGGATGTTCCGCCTCAAGTACGGCA
LOC_Os01g68210
Target Sequence 
TTCTGCTTCGACACGGAGAGCTTGGAGTGGACCGACTACGGCTGCTGGATGCTGCCGTTCCAGGGTCAGGGACACTACGA
CGCCGAGCTGGACGCCTGGGTTGGCATCTGCCGCCACCCGGACAAGCCCGGCCGCCTCTGCTCGTCCGACGTCCCGGCCC
CGCGCATCAGAGGCCGGGACAGCAGGTGGCGGGTCCCGTCGTGCAAGATCGGCAAGGACGTCCTCTTCTGCAAGGACAAG
GAGCGGCACCGAGGGGTCGCTCTCCACTACATGGGCAGCGACAGCAACTTCTGTCTGCTCGAGTGCGTGGAGCAGCCGGC
GGCGACGGCGAGTCGGCTCATGTACGTGCGGATGTTCCGCCTCAAGTACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis