Browse Element(s) Details


OsAffx.11879.1.S1_at

Description tigr:9630.m00259
TID=OsAffx.11879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=18.1 kda class i heat shock protein (fragment). (alfalfa)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0357011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11879.1.S1_at--796--8911Chr02:1450339..1450363 (25 bp)
TGAGCGTGGACATCATGGAGCCGTT
LOC_Os02g03570
OsAffx.11879.1.S1_at--308--4671Chr02:1450342..1450366 (25 bp)
GCGTGGACATCATGGAGCCGTTCAT
LOC_Os02g03570
OsAffx.11879.1.S1_at--85--8131Chr02:1450346..1450370 (25 bp)
GGACATCATGGAGCCGTTCATGGAC
LOC_Os02g03570
OsAffx.11879.1.S1_at--666--411Chr02:1450350..1450374 (25 bp)
ATCATGGAGCCGTTCATGGACGCGA
LOC_Os02g03570
OsAffx.11879.1.S1_at--79--851Chr02:1450353..1450377 (25 bp)
ATGGAGCCGTTCATGGACGCGATCT
LOC_Os02g03570
OsAffx.11879.1.S1_at--730--5871Chr02:1450356..1450380 (25 bp)
GAGCCGTTCATGGACGCGATCTCGC
LOC_Os02g03570
OsAffx.11879.1.S1_at--1149--6731Chr02:1450361..1450385 (25 bp)
GTTCATGGACGCGATCTCGCTGACG
LOC_Os02g03570
OsAffx.11879.1.S1_at--135--851Chr02:1450365..1450389 (25 bp)
ATGGACGCGATCTCGCTGACGGCGT
LOC_Os02g03570
OsAffx.11879.1.S1_at--492--2891Chr02:1450539..1450563 (25 bp)
AAGGTGCTCAGGATCAGCGGGCAGC
LOC_Os02g03570
OsAffx.11879.1.S1_at--817--4652Chr02:1450603..1450627 (25 bp)
GCGTCGAGCGGAGCTCCGAGCGGTT
LOC_Os02g03570
OsAffx.11879.1.S1_at--571--1591Chr02:1450614..1450638 (25 bp)
AGCTCCGAGCGGTTCGTTCGCACCG
LOC_Os02g03570
Target Sequence 
TGAGCGTGGACATCATGGAGCCGTTCATGGACGCGATCTCGCTGACGGCGTTCGCGGCGGCGCCGTCGGCGGCGGCGGCG
GCGGCGGGCGTGCCGTCGACGGCGAGCATGGACTGGAAGGAGACGGCGGCGGCGCACGTGTTCATGGCGGACATGCCCGG
GGTGCGGAGGGAGGAGGTGCGGGTGGAGGTGGAGGAGGAGAAGGTGCTCAGGATCAGCGGGCAGCGGGCGCGCGCCGCGG
AGGAGAAGGGCGAGCGGTGGCACCGCGTCGAGCGGAGCTCCGAGCGGTTCGTTCGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis