Browse Element(s) Details


OsAffx.11907.1.S1_at

Description tigr:9630.m00497
TID=OsAffx.11907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0572011/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05686Os.25099.1.A1_at10/112+2786757..2789073expressed protein
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05710Os.8141.1.S1_at11/112+2804122..2807633expressed protein
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g05760OsAffx.31174.4.S1_x_at2/112+2833224..2836631hypothetical protein
LOC_Os02g05760OsAffx.31174.5.S1_x_at1/112+2833224..2836631hypothetical protein
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11907.1.S1_at--818--2771Chr02:2814591..2814615 (25 bp)
AAGAGCCTGGTTGCAGCTGGACACA
LOC_Os02g05720
OsAffx.11907.1.S1_at--44--6051Chr02:2814674..2814698 (25 bp)
GAGATAGTTGCTACCCTCGAAGAAC
LOC_Os02g05720
OsAffx.11907.1.S1_at--179--3811Chr02:2814781..2814805 (25 bp)
CTCCCTTTTGTACCACAGTGAGAAG
LOC_Os02g05720
OsAffx.11907.1.S1_at--850--10411Chr02:2814817..2814841 (25 bp)
TTATTGCCTTCTTGCTACACCTAAG
LOC_Os02g05720
OsAffx.11907.1.S1_at--773--2871Chr02:2814839..2814863 (25 bp)
AAGGGCATGCCTATACAGATACTGA
LOC_Os02g05720
OsAffx.11907.1.S1_at--655--371Chr02:2814899..2814923 (25 bp)
ATCAAGTTTGTATCTCATGTCACCA
LOC_Os02g05720
OsAffx.11907.1.S1_at--141--8151Chr02:2814947..2814971 (25 bp)
GGAAATCGGTTCCATCATTTTAGGA
LOC_Os02g05720
OsAffx.11907.1.S1_at--838--4731Chr02:2816009..2816033 (25 bp)
GCTGTTTTGATTGCGCATGGACTTG
LOC_Os02g05720
OsAffx.11907.1.S1_at--220--7031Chr02:2816041..2816065 (25 bp)
GTACAGTTGTACACCATGTCAGATC
LOC_Os02g05720
OsAffx.11907.1.S1_at--205--5051Chr02:2816095..2816119 (25 bp)
GCAGAGTCATATGGTGCAGGCCAAT
LOC_Os02g05720
OsAffx.11907.1.S1_at--615--8891Chr02:2816119..2816143 (25 bp)
TGAGTGGATGAAGACCCCGACAAAT
LOC_Os02g05720
Target Sequence 
AAGAGCCTGGTTGCAGCTGGACACAGATAAAAGACAAAATGCACTCCTTTGTCACTGGCGATAAGCAGCATGAGCAGATT
GAAGAGATAGTTGCTACCCTCGAAGAACTGTACACTTTGTTAAAGGCTACAGGCTATGTGCCTGACACAGAATTTGTTCT
CCATGACATTGATGAAGAGCAGAAGGAGAGCTCCCTTTTGTACCACAGTGAGAAGCTTGCTGTTGCTTATTGCCTTCTTG
CTACACCTAAGGGCATGCCTATACAGATACTGAAGAACCTTAGAATATGTGGTGACTGTCATACTTTTATCAAGTTTGTA
TCTCATGTCACCAAGAGACAAATTGACATTAGGGATGGAAATCGGTTCCATCATTTTAGGAACGCTGTTTTGATTGCGCA
TGGACTTGTATGCTTGTACAGTTGTACACCATGTCAGATCAGAGCTGTAGGAGATTTGAACACGAGATTGCAGAGTCATA
TGGTGCAGGCCAATGAGTGGATGAAGACCCCGACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis