Browse Element(s) Details


OsAffx.11931.1.S1_at

Description tigr:9630.m00732
TID=OsAffx.11931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0780010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11931.1.S1_at--736--731Chr02:4083883..4083906 (24 bp)
ATGTTCATCTGCCTGGACATTCCGA
LOC_Os02g07800
OsAffx.11931.1.S1_at--514--8531NONE
TGGACATTCCGAAGTCTGCGAAACG
NONE
OsAffx.11931.1.S1_at--470--2371Chr02:4085212..4085236 (25 bp)
AAACCGATGCATGTGAACTGGCCAA
LOC_Os02g07800
OsAffx.11931.1.S1_at--259--351Chr02:4085305..4085329 (25 bp)
ATAACCTTGCTATCTCATCGGATTC
LOC_Os02g07800
OsAffx.11931.1.S1_at--457--7931Chr02:4085324..4085348 (25 bp)
GGATTCTATGGAAACCACTCGCCAA
LOC_Os02g07800
OsAffx.11931.1.S1_at--1079--8831Chr02:4085362..4085386 (25 bp)
TGATCAAATCGCTAGGTGGGCTTGT
LOC_Os02g07800
OsAffx.11931.1.S1_at--166--8651Chr02:4085378..4085402 (25 bp)
TGGGCTTGTGAGCTACCTGAACCAA
LOC_Os02g07800
OsAffx.11931.1.S1_at--252--1391Chr02:4085610..4085634 (25 bp)
AGACATTGCTACCTGCATTGGCATC
LOC_Os02g07800
OsAffx.11931.1.S1_at--1143--4931Chr02:4085624..4085648 (25 bp)
GCATTGGCATCACCATTTCTCAGCG
LOC_Os02g07800
OsAffx.11931.1.S1_at--1121--10571Chr02:4085640..4085664 (25 bp)
TTCTCAGCGCCATTGTGTACTTCAG
LOC_Os02g07800
OsAffx.11931.1.S1_at--624--10531Chr02:4085660..4085684 (25 bp)
TTCAGTGTCTGGCAATCTGCTGTTC
LOC_Os02g07800
Target Sequence 
ATGTTCATCTGCCTGGACATTCCGAAGTCTGCGAAACGGGAGCAAACAACGAGGGCAAGAAAAGCCAAACCGATGCATGT
GAACTGGCCAACAAGTTACAAGAGAACGCGCAGCACATCCATATGCTACTCAAAGAGGAGGCAGGCGAAAATGAGAACCA
TAACCTTGCTATCTCATCGGATTCTATGGAAACCACTCGCCAAAAAGGTGATGAGCTGATCAAATCGCTAGGTGGGCTTG
TGAGCTACCTGAACCAATTCACTGATCTGATCAAGGAGAATGGATTCGAGAATGTCGTCGGTTTGTGGCAGACATTGCTA
CCTGCATTGGCATCACCATTTCTCAGCGCCATTGTGTACTTCAGTGTCTGGCAATCTGCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis