Browse Element(s) Details


OsAffx.11966.1.S1_x_at

Description tigr:9630.m00920
TID=OsAffx.11966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1004011/11guanine nucleotide-exchange protein, putative, expressed
LOC_Os06g417801/11guanine nucleotide exchange family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11966.1.S1_x_at--1145--3051Chr02:5221702..5221726 (25 bp)
AATCATATGGCGCAGCAGCTCTTAG
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--1110--5051Chr02:5221693..5221712 (20 bp)
GCAGCTCTTAGTTGTTCAGGGCATA
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--830--1051Chr02:5221453..5221477 (25 bp)
AGGTGGTCTTTTTATGCTGAGCATA
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--601--10451Chr02:5221417..5221441 (25 bp)
TTAGAGACACTATCAGCCATTGCGT
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--1135--652Chr06:25052270..25052351 (25 bp)
ATGCAAGTGAAGTGTCTGAGCCAGC
LOC_Os06g41780
OsAffx.11966.1.S1_x_at--166--5871Chr02:5221315..5221339 (25 bp)
GAGCCAGCAGTCATTCATTTCGAGA
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--735--2391Chr02:5221267..5221291 (25 bp)
AAACTTCTGCAAGCTTTGGTTCATG
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--419--8931Chr02:5221244..5221268 (25 bp)
TGACCACCCATCAATCTCAGAAGAT
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--910--131Chr02:5221112..5221136 (25 bp)
ATTACGCTGGAAACTGCCTTTGGGC
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--703--8011Chr02:5221076..5221100 (25 bp)
GGAGGAACTGTCTGCTAGAACTTCA
LOC_Os02g10040
OsAffx.11966.1.S1_x_at--76--5491Chr02:5221059..5221083 (25 bp)
GAACTTCATTGGTCCTTCATGTGAT
LOC_Os02g10040
Target Sequence 
AATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGA
GCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGTCTGAGCCAGCAGTCATTCATT
TCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATG
AAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAA
CGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAA
CTTCATTGGTCCTTCATGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11966.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis