Browse Element(s) Details


OsAffx.11993.2.S1_s_at

Description tigr:9630.m00081
TID=OsAffx.11993.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ABC transporter ecsA-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0182010/11ABC transporter, putative
LOC_Os02g1196010/11ABC transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01810OsAffx.24054.1.S1_x_at8/112+448105..449790hypothetical protein
LOC_Os02g01810OsAffx.24054.1.S1_at8/112+448105..449790hypothetical protein
LOC_Os02g01820OsAffx.11993.2.S1_at11/112+451471..454309ABC transporter, putative
LOC_Os02g01820OsAffx.11993.2.S1_s_at10/112+451471..454309ABC transporter, putative
LOC_Os02g01830Os.52249.2.S1_x_at10/112+458781..459988expressed protein
LOC_Os02g01830Os.51370.1.S1_x_at2/112+458781..459988expressed protein
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11993.2.S1_s_at--429--7331NONE
GTGCACCATTATCTCAGGCCATTGA
NONE
OsAffx.11993.2.S1_s_at--263--7732Chr02:6203492..6203516 (25 bp)
GGTGGCATTGCCGATAAGCTTGTAA
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--744--3052Chr02:6203557..6203581 (25 bp)
AATCTCTCTAATTGGTGACCCTAAG
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--838--1572Chr02:6203684..6203708 (25 bp)
AGCTCAGGGTTGGACCCAGCATCAA
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--826--8512Chr02:6203720..6203744 (25 bp)
TGGAATGCTGTCAAGTCTGCCAAGC
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--73--1092Chr02:6203750..6203889 (25 bp)
AGGGCCATAATTCTCACAACGCATT
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--953--1592Chr02:6203900..6203924 (25 bp)
AGCTGAATTTCTATGCGATCGGATA
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--1072--212Chr02:6204095..6204119 (25 bp)
ATATGTCCTCACAGTAACAACCGCG
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--749--452Chr02:6204159..6204183 (25 bp)
ATCTCCCCTACCATGAACATTGTGT
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--441--2512Chr02:6204174..6204198 (25 bp)
AACATTGTGTACCACATCTCCGGGA
LOC_Os02g11960
OsAffx.11993.2.S1_s_at--987--2092Chr02:6204187..6204211 (25 bp)
ACATCTCCGGGACGCAGAAGTTCGA
LOC_Os02g11960
Target Sequence 
GTGCACCATTATCTCAGGCCATTGAGAAATCTTTGAAAAATGTGCGCCTGTTTGCTGGTGGCATTGCCGATAAGCTTGTA
AGCAAATACAGTGGTGGCATGAAACGTCGTCTCAGCGTTGCAATCTCTCTAATTGGTGACCCTAAGGTAGTTTATATGGA
TGAACCAAGCTCAGGGTTGGACCCAGCATCAAGGAAAGACTTATGGAATGCTGTCAAGTCTGCCAAGCAGGACAGGGCCA
TAATTCTCACAACGCATTCGATGGAAGAAGCTGAATTTCTATGCGATCGGATAGGAATTATCGCAAACGGTAGCTTGCAA
TGCATCGGGAACTCTAAAGAGCTGAAAGCAAAATATGGAGGCTCATATGTCCTCACAGTAACAACCGCGACGGGCGAGGC
GGAGGAGGAGATGAGGAGACTGGTCCAGTCCATCTCCCCTACCATGAACATTGTGTACCACATCTCCGGGACGCAGAAGT
TCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11993.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis