Browse Element(s) Details


OsAffx.12050.1.S1_at

Description tigr:9630.m01427
TID=OsAffx.12050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1525011/11Late embryogenesis abundant protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15220Os.7796.1.S1_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_a_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_at3/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15230Os.7804.1.S1_at11/112+8501518..8504975GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g15240OsAffx.13097.1.S1_s_at11/112+8508503..8515678hypothetical protein
LOC_Os02g15240Os.46613.1.S2_at4/112+8508503..8515678hypothetical protein
LOC_Os02g15250OsAffx.12050.1.S1_at11/112+8516794..8518231Late embryogenesis abundant protein, expressed
LOC_Os02g15260OsAffx.12051.1.S1_s_at11/112+8525127..8531124hypothetical protein
LOC_Os02g15260Os.52126.1.S1_at10/112+8525127..8531124hypothetical protein
LOC_Os02g15260OsAffx.12051.1.S1_at9/112+8525127..8531124hypothetical protein
LOC_Os02g15270Os.54097.1.A1_at11/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15270Os.34341.1.S1_at1/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15280OsAffx.12052.1.S1_at11/112+8539272..8539622VQ motif family protein
LOC_Os02g15290Os.56119.1.S1_at11/112+8541337..8542124VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12050.1.S1_at--732--1171Chr02:8517368..8517392 (25 bp)
AGTACACCCAGCAGGCGGCCGTGAA
LOC_Os02g15250
OsAffx.12050.1.S1_at--551--2171Chr02:8517278..8517302 (25 bp)
ACACCGCGCACAAGGTGGCGGAGTA
LOC_Os02g15250
OsAffx.12050.1.S1_at--848--4571Chr02:8517161..8517185 (25 bp)
GCGACATGGCCGGACAAACCAAAGA
LOC_Os02g15250
OsAffx.12050.1.S1_at--831--5631Chr02:8517138..8517162 (25 bp)
GACACGACGAGCGACACAACGGGAG
LOC_Os02g15250
OsAffx.12050.1.S1_at--205--5011Chr02:8517113..8517137 (25 bp)
GCATGGCGCACAAGGCCGGTGCCAT
LOC_Os02g15250
OsAffx.12050.1.S1_at--128--5631Chr02:8517072..8517096 (25 bp)
GACACAGTGAAGGACGCAGCCGCAG
LOC_Os02g15250
OsAffx.12050.1.S1_at--727--1691Chr02:8517049..8517073 (25 bp)
AGCCATGGCGCAGAAGACGAGCGAC
LOC_Os02g15250
OsAffx.12050.1.S1_at--891--2171Chr02:8517026..8517050 (25 bp)
ACACGATCGCTCAGGCAGGGCACGG
LOC_Os02g15250
OsAffx.12050.1.S1_at--881--2611Chr02:8516985..8517009 (25 bp)
AACCGAGCGGCAGAGTCCGGCAAGA
LOC_Os02g15250
OsAffx.12050.1.S1_at--76--6112Chr12:20141884..20141957 (25 bp)
GAGTCCGGCAAGAACTCATCGGCGA
NONE
OsAffx.12050.1.S1_at--512--1911Chr02:8516868..8516892 (25 bp)
ACGGTGTACGGGATAGCGAAGCACA
LOC_Os02g15250
Target Sequence 
AGTACACCCAGCAGGCGGCCGTGAAGGCCAAGGACGTGACGCTCTCCACCGGCGCGACGGTGGCGCAGAAGGCCAAGGAG
GTGACCGCCGACACCGCGCACAAGGTGGCGGAGTACGCGCGGGAGAAGGCGGAGCAAGGGAAGGAGGCCGCGGCCCGCGC
CGCCGACGGCGCGGAGGAGCCGAGCTCCGGGACGGCGGACAAGGCCGGCGACATGGCCGGACAAACCAAAGACACGACGA
GCGACACAACGGGAGGCATGGCGCACAAGGCCGGTGCCATGGCGGCGCAGACCAAGGACACAGTGAAGGACGCAGCCGCA
GCCATGGCGCAGAAGACGAGCGACACGATCGCTCAGGCAGGGCACGGAGCAGGTGAAGCAAAGAACCGAGCGGCAGAGTC
CGGCAAGAACTCATCGGCGACCACCACCATCGGCAGCGGCGGCGGCGGCGACGGCGACGACACGACGGTGGTGGGCGACG
TGCTGGAGGCGGTGGGCGCGACGGTGTACGGGATAGCGAAGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis