Browse Element(s) Details


OsAffx.12073.1.S1_at

Description tigr:9630.m01559
TID=OsAffx.12073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g319601/11Acetolactate synthase III, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified
LOC_Os04g32000Os.53383.1.S1_at11/114+18971208..18974400expressed protein
LOC_Os04g32000Os.53383.1.S1_x_at11/114+18971208..18974400expressed protein
LOC_Os04g32004NANA4+18977352..18977636hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0003984molecular_functionacetolactate synthase activity
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12073.1.S1_at--478--4171Chr02:9547259..9547283 (25 bp)
CGCCATGATCCACGTCGAGAACCTG
NONE
OsAffx.12073.1.S1_at--98--711Chr02:9547255..9547279 (25 bp)
ATGATCCACGTCGAGAACCTGCCGG
NONE
OsAffx.12073.1.S1_at--159--592Chr04:18955028..18955070 (25 bp)
ATCCACGTCGAGAACCTGCCGGTGA
LOC_Os04g31960
OsAffx.12073.1.S1_at--736--2451Chr02:9547213..9547237 (25 bp)
AACAACCAGCTTGGTTATCCCTCTT
NONE
OsAffx.12073.1.S1_at--593--2631Chr02:9547210..9547234 (25 bp)
AACCAGCTTGGTTATCCCTCTTCTT
NONE
OsAffx.12073.1.S1_at--882--10851Chr02:9547203..9547227 (25 bp)
TTGGTTATCCCTCTTCTTCACATTT
NONE
OsAffx.12073.1.S1_at--623--10432Chr07:3104148..3104558 (25 bp)
TTATCCCTCTTCTTCACATTTGTTT
NONE
OsAffx.12073.1.S1_at--137--552Chr04:6630270..6630291 (22 bp)
ATCCCTCTTCTTCACATTTGTTTGT
NONE
OsAffx.12073.1.S1_at--817--3652Chr04:6630273..6630292 (20 bp)
CTTCTTCACATTTGTTTGTTCTCAG
NONE
OsAffx.12073.1.S1_at--1140--3651Chr02:9547188..9547212 (25 bp)
CTTCACATTTGTTTGTTCTCAGTAT
NONE
OsAffx.12073.1.S1_at--759--6851Chr02:9547178..9547202 (25 bp)
GTTTGTTCTCAGTATATTCTTCAAC
NONE
Target Sequence 
CGCCATGATCCACGTCGAGAACCTGCCGGTGAAGGTGATGGTGCTCAACAACCAGCTTGGTTATCCCTCTTCTTCACATT
TGTTTGTTCTCAGTATATTCTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis