Browse Element(s) Details


OsAffx.12105.1.S1_at

Description tigr:9630.m01778
TID=OsAffx.12105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1877011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18700OsAffx.2672.2.S1_at11/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18700OsAffx.4421.1.S1_at1/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18710OsAffx.12104.1.S1_at11/112+10920084..10920551hypothetical protein
LOC_Os02g18720OsAffx.24311.1.S1_at11/112+10922184..10923458hypothetical protein
LOC_Os02g18730NANA2+10925193..10928745retrotransposon protein, putative, LINE subclass
LOC_Os02g18740OsAffx.32001.1.S1_at10/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18740OsAffx.20687.1.S1_at6/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18750OsAffx.2671.1.S1_x_at8/112+10931589..10932523expressed protein
LOC_Os02g18750Os.54814.1.S1_at8/112+10931589..10932523expressed protein
LOC_Os02g18760OsAffx.28462.1.S1_at1/112+10934277..10938654retrotransposon protein, putative, unclassified
LOC_Os02g18770OsAffx.12105.1.S1_at11/112+10939563..10941269hypothetical protein
LOC_Os02g18770Os.57362.1.S1_at1/112+10939563..10941269hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_x_at7/112+10945254..10947535hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_at3/112+10945254..10947535hypothetical protein
LOC_Os02g18790OsAffx.2674.1.S1_at11/112+10955205..10955979hypothetical protein
LOC_Os02g18800OsAffx.29369.1.S1_at11/112+10959461..10960432hypothetical protein
LOC_Os02g18810Os.54169.1.S1_at11/112+10960659..10968044pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12105.1.S1_at--759--2771Chr02:10939613..10939637 (25 bp)
AAGAGCCGCGGCGTCAACGGTGACC
LOC_Os02g18770
OsAffx.12105.1.S1_at--86--1031Chr02:10939648..10939672 (25 bp)
AGGTAGAACTTGACGCTGTGGCCAC
LOC_Os02g18770
OsAffx.12105.1.S1_at--306--5471Chr02:10939653..10939677 (25 bp)
GAACTTGACGCTGTGGCCACCGTGT
LOC_Os02g18770
OsAffx.12105.1.S1_at--422--4411Chr02:10939668..10939692 (25 bp)
GCCACCGTGTCGTTGATAGGCGTGA
LOC_Os02g18770
OsAffx.12105.1.S1_at--59--691Chr02:10939692..10939716 (25 bp)
ATGACGAGAGCAGAAATCACCGCTT
LOC_Os02g18770
OsAffx.12105.1.S1_at--1124--1411Chr02:10939703..10939727 (25 bp)
AGAAATCACCGCTTGGACGGCCTTG
LOC_Os02g18770
OsAffx.12105.1.S1_at--938--9671Chr02:10939708..10939732 (25 bp)
TCACCGCTTGGACGGCCTTGGCAGT
LOC_Os02g18770
OsAffx.12105.1.S1_at--681--3431Chr02:10939729..10939753 (25 bp)
CAGTCGCGGCCGAAGTCGCGTCGAT
LOC_Os02g18770
OsAffx.12105.1.S1_at--437--2851Chr02:10939741..10939765 (25 bp)
AAGTCGCGTCGATGAGAGCCGTGGC
LOC_Os02g18770
OsAffx.12105.1.S1_at--29--1931Chr02:10939772..10939796 (25 bp)
ACGGTCGTCAGGTGAGGCCGAGTCG
LOC_Os02g18770
OsAffx.12105.1.S1_at--313--7531Chr02:10939799..10939823 (25 bp)
GGGCCGAAGGACCTGCCGGATGGCA
LOC_Os02g18770
Target Sequence 
AAGAGCCGCGGCGTCAACGGTGACCGTTGTCGGGAAGGTAGAACTTGACGCTGTGGCCACCGTGTCGTTGATAGGCGTGA
TGACGAGAGCAGAAATCACCGCTTGGACGGCCTTGGCAGTCGCGGCCGAAGTCGCGTCGATGAGAGCCGTGGCGGCGGCA
CGGTCGTCAGGTGAGGCCGAGTCGTCGGGCCGAAGGACCTGCCGGATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis