Browse Element(s) Details


OsAffx.12144.2.A1_s_at

Description tigr:9631.m04800
TID=OsAffx.12144.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4924011/11hypothetical protein
LOC_Os03g0266011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12144.2.A1_s_at--89--9193Chr03:964651..964675 (25 bp)
TGCCGTCGACGAGAGGGACTCGCTC
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--630--3812Chr03:964705..964729 (25 bp)
CTCCTCGTCGGAGTGTGAGTACATG
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--541--3792Chr03:964708..964732 (25 bp)
CTCGTCGGAGTGTGAGTACATGGCC
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--677--1092Chr03:964716..964740 (25 bp)
AGTGTGAGTACATGGCCGAGTCAGA
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--570--1173Chr03:964722..964746 (25 bp)
AGTACATGGCCGAGTCAGAGGCTGA
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--642--9873Chr03:964724..964748 (25 bp)
TACATGGCCGAGTCAGAGGCTGAGC
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--131--8473Chr03:964728..964752 (25 bp)
TGGCCGAGTCAGAGGCTGAGCTGGC
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--218--3912Chr03:964794..964818 (25 bp)
CGGAGTACGAAAAGACGTCGCAGTC
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--988--9933Chr03:964799..964823 (25 bp)
TACGAAAAGACGTCGCAGTCGAGCA
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--518--2433Chr03:964803..964827 (25 bp)
AAAAGACGTCGCAGTCGAGCACGGG
LOC_Os03g02660
OsAffx.12144.2.A1_s_at--1072--8053Chr03:964827..964851 (25 bp)
GGAGCGTCGCCTTCCATGGCGCTGC
LOC_Os03g02660
Target Sequence 
TGCCGTCGACGAGAGGGACTCGCTCGGGCTGCCGTTGCCGGTGGTGAGCAACTGCTCCTCGTCGGAGTGTGAGTACATGG
CCGAGTCAGAGGCTGAGCTGGCGAAGACGGAGGAGAAGTGCGCGTCGGCGTCGTCAGCGTCGGAGTACGAAAAGACGTCG
CAGTCGAGCACGGGGAGCGTCGCCTTCCATGGCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12144.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis