Browse Element(s) Details


OsAffx.12146.1.S1_at

Description tigr:9630.m02046
TID=OsAffx.12146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2134011/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21300OsAffx.2707.1.S1_at11/112+12645468..12647677transposon protein, putative, unclassified, expressed
LOC_Os02g21310OsAffx.24365.1.S1_x_at9/112+12650102..12651466expressed protein
LOC_Os02g21320OsAffx.24453.1.S1_x_at8/112+12652063..12654527hypothetical protein
LOC_Os02g21320OsAffx.24453.3.S1_x_at6/112+12652063..12654527hypothetical protein
LOC_Os02g21330Os.52060.1.S1_at11/112+12656328..12657274expressed protein
LOC_Os02g21340OsAffx.12146.1.S1_at11/112+12663831..12669649ABC-2 type transporter family protein, expressed
LOC_Os02g21350OsAffx.24366.1.S1_at11/112+12680130..12680576hypothetical protein
LOC_Os02g21359NANA2+12683271..12683920NA
LOC_Os02g21370OsAffx.24367.1.S1_at11/112+12685120..12685344hypothetical protein
LOC_Os02g21379OsAffx.27819.1.S1_x_at1/112+12686872..12688845NA
LOC_Os02g21379Os.31613.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21379OsAffx.28548.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21390NANA2+12693440..12695240hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12146.1.S1_at--135--6831Chr02:12665032..12665056 (25 bp)
GTTTACTATCGTGAAAGCGCAGCAG
LOC_Os02g21340
OsAffx.12146.1.S1_at--576--8231Chr02:12664427..12664451 (25 bp)
GGCAAGCGTGGAGTTCATTTACAAT
LOC_Os02g21340
OsAffx.12146.1.S1_at--827--10391Chr02:12664389..12664413 (25 bp)
TTTTGTACACGGTCATCATCTATGC
LOC_Os02g21340
OsAffx.12146.1.S1_at--693--9031Chr02:12664250..12664274 (25 bp)
TGCACTGCTTGCGAACATTCTCATA
LOC_Os02g21340
OsAffx.12146.1.S1_at--293--5491Chr02:12664238..12664262 (25 bp)
GAACATTCTCATAACCTTTGCACTC
LOC_Os02g21340
OsAffx.12146.1.S1_at--563--9011Chr02:12664220..12664244 (25 bp)
TGCACTCCCTCTTTGGAACTTGTTT
LOC_Os02g21340
OsAffx.12146.1.S1_at--825--5451Chr02:12664205..12664229 (25 bp)
GAACTTGTTTGCTGGGTTCCTTATT
LOC_Os02g21340
OsAffx.12146.1.S1_at--670--8611Chr02:12664017..12664041 (25 bp)
TGGTGTCATTGCATCACAGTTTGGA
LOC_Os02g21340
OsAffx.12146.1.S1_at--798--6531Chr02:12663978..12664002 (25 bp)
GATTTCAGTTCCTGGTGGGAGCCAT
LOC_Os02g21340
OsAffx.12146.1.S1_at--1084--9751Chr02:12663927..12663951 (25 bp)
TAATGTTGGCGTCCGACATGACTTC
LOC_Os02g21340
OsAffx.12146.1.S1_at--248--2051Chr02:12663888..12663912 (25 bp)
ACTTGCCCATTTTGGCTTTATGGCC
LOC_Os02g21340
Target Sequence 
GTTTACTATCGTGAAAGCGCAGCAGGAATGTACTCTCCATTGTCCTATGCATTTGCTCAGGCAAGCGTGGAGTTCATTTA
CAATATCATACAAGGGATTTTGTACACGGTCATCATCTATGCAATGATCGGATACGATTGGAAAGCTAGCAAATTCTTTT
ATTTTCTATTCTTCATTGTTTCAAGCTTCAACTACTTCACATTTTTCGGAATGATGTTGGTGGCATGCACCCCATCTGCA
CTGCTTGCGAACATTCTCATAACCTTTGCACTCCCTCTTTGGAACTTGTTTGCTGGGTTCCTTATTTTTAGGAAGGCAAT
ACCAATTTGGTGGAGGTGGTACTATTGGGCAAACCCAGTATCCTGGACAATATATGGTGTCATTGCATCACAGTTTGGAG
GGAACGGTGGATCGATTTCAGTTCCTGGTGGGAGCCATGTAGCAATGAGCCAAATTTTGGAAGATAATGTTGGCGTCCGA
CATGACTTCCTAGGATATGTTATACTTGCCCATTTTGGCTTTATGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis