Browse Element(s) Details


OsAffx.12271.1.S1_at

Description tigr:9630.m02806
TID=OsAffx.12271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2939011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29400Os.6440.1.S1_at11/112+17458157..17458759Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12271.1.S1_at--207--9311Chr02:17450546..17450565 (20 bp)
TCCCCGGTGGGCAGCTAACCGAGAA
LOC_Os02g29390
OsAffx.12271.1.S1_at--1066--3971Chr02:17450542..17450565 (24 bp)
CGGTGGGCAGCTAACCGAGAACATG
LOC_Os02g29390
OsAffx.12271.1.S1_at--689--5971Chr02:17450526..17450550 (25 bp)
GAGAACATGGTCATCACAGGCTCAC
LOC_Os02g29390
OsAffx.12271.1.S1_at--747--5491Chr02:17450524..17450548 (25 bp)
GAACATGGTCATCACAGGCTCACAG
LOC_Os02g29390
OsAffx.12271.1.S1_at--1035--2091Chr02:17450522..17450546 (25 bp)
ACATGGTCATCACAGGCTCACAGCA
LOC_Os02g29390
OsAffx.12271.1.S1_at--17--811Chr02:17450520..17450544 (25 bp)
ATGGTCATCACAGGCTCACAGCAGC
LOC_Os02g29390
OsAffx.12271.1.S1_at--322--2151Chr02:17450503..17450527 (25 bp)
ACAGCAGCCTCCATGCACTCAGAGT
LOC_Os02g29390
OsAffx.12271.1.S1_at--217--1691Chr02:17450498..17450522 (25 bp)
AGCCTCCATGCACTCAGAGTCGGAG
LOC_Os02g29390
OsAffx.12271.1.S1_at--625--651Chr02:17450491..17450515 (25 bp)
ATGCACTCAGAGTCGGAGGTTGCAA
LOC_Os02g29390
OsAffx.12271.1.S1_at--140--9651Chr02:17450485..17450509 (25 bp)
TCAGAGTCGGAGGTTGCAAGAATGA
LOC_Os02g29390
OsAffx.12271.1.S1_at--254--3231Chr02:17450469..17450493 (25 bp)
CAAGAATGAGTTTGGATCTTCCTCT
LOC_Os02g29390
Target Sequence 
TCCCCGGTGGGCAGCTAACCGAGAACATGGTCATCACAGGCTCACAGCAGCCTCCATGCACTCAGAGTCGGAGGTTGCAA
GAATGAGTTTGGATCTTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis