Browse Element(s) Details


OsAffx.12351.1.S1_at

Description tigr:9630.m03311
TID=OsAffx.12351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3475011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34700NANA2+20810233..20811993pentatricopeptide, putative
LOC_Os02g34710OsAffx.24576.1.S1_x_at11/112+20817610..20818650expressed protein
LOC_Os02g34719NANA2+20823053..20823213NA
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34770OsAffx.12352.1.S1_at11/112+20843795..20845282Leucine Rich Repeat family protein
LOC_Os02g34780OsAffx.24577.1.S1_at11/112+20846984..20847190hypothetical protein
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0008534molecular_functionpurine-specific oxidized base lesion DNA N-glycosylase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12351.1.S1_at--435--8011Chr02:20838062..20838086 (25 bp)
GGAGGATACCAATTCCACCAATTCC
LOC_Os02g34750
OsAffx.12351.1.S1_at--522--7011Chr02:20837506..20837530 (25 bp)
GTACATCGTCGGCACTGCTAAAATA
LOC_Os02g34750
OsAffx.12351.1.S1_at--804--2291Chr02:20837454..20837478 (25 bp)
AAATGGCTTGCCTCATTGCGTACAA
LOC_Os02g34750
OsAffx.12351.1.S1_at--404--1051Chr02:20837417..20837441 (25 bp)
AGGTGATTGAGGCTCTTTGCACCCT
LOC_Os02g34750
OsAffx.12351.1.S1_at--661--2331Chr02:20837376..20837400 (25 bp)
AAAGTTGCAGCCTGTGTTGCTTTGT
LOC_Os02g34750
OsAffx.12351.1.S1_at--648--6671Chr02:20837361..20837385 (25 bp)
GTTGCTTTGTTCTCACTCGATCAGA
LOC_Os02g34750
OsAffx.12351.1.S1_at--387--5631Chr02:20837305..20837343 (25 bp)
GACACACATGTCTGGAAGGTTGCTA
LOC_Os02g34750
OsAffx.12351.1.S1_at--595--6671Chr02:20836737..20836761 (25 bp)
GTTGCTACACAATATCTGATGCCGG
LOC_Os02g34750
OsAffx.12351.1.S1_at--170--2531Chr02:20836685..20836709 (25 bp)
AACTTAGTGTTGCTGTTGCCGATGC
LOC_Os02g34750
OsAffx.12351.1.S1_at--988--5271Chr02:20836621..20836645 (25 bp)
GAATGTTCTCTTTATTGGCCAGCTG
LOC_Os02g34750
OsAffx.12351.1.S1_at--922--1611Chr02:20836601..20836625 (25 bp)
AGCTGTCTGCTCAAAAACTCATGGT
LOC_Os02g34750
Target Sequence 
GGAGGATACCAATTCCACCAATTCCCCACGATCGAGCGGCTCGCGCGCGTGTCGGAGCAAGAGCTCCGGGATGCCGGGTT
CGGGTACAGGGCAAAGTACATCGTCGGCACTGCTAAAATATTACAGGCCAAGCCTGGTGGAGGCGAGAAATGGCTTGCCT
CATTGCGTACAAGGGAACTCCCGGAGGTGATTGAGGCTCTTTGCACCCTTCCAGGTGTTGGGCCAAAAGTTGCAGCCTGT
GTTGCTTTGTTCTCACTCGATCAGAACCATGCTATTCCTGTTGACACACATGTCTGGAAGGTTGCTACACAATATCTGAT
GCCGGAGCTAGCTGGCAAGAGCTTAACCCCAAAACTTAGTGTTGCTGTTGCCGATGCATTTGTTGCTAAATTTGGGAACT
ATGCTGGTTGGGCACAGAATGTTCTCTTTATTGGCCAGCTGTCTGCTCAAAAACTCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis