Browse Element(s) Details


OsAffx.12355.1.S1_at

Description tigr:9630.m03334
TID=OsAffx.12355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3498011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12355.1.S1_at--1148--10231Chr02:20975560..20975584 (25 bp)
TTTGGAAGCACCTCAACGTGGCCAT
LOC_Os02g34980
OsAffx.12355.1.S1_at--32--5391Chr02:20975564..20975588 (25 bp)
GAAGCACCTCAACGTGGCCATTCCT
LOC_Os02g34980
OsAffx.12355.1.S1_at--1063--8451Chr02:20975578..20975602 (25 bp)
TGGCCATTCCTTCATCACAAGAGAG
LOC_Os02g34980
OsAffx.12355.1.S1_at--549--2771Chr02:20975596..20975620 (25 bp)
AAGAGAGATCATGCAAGAATGTCTG
LOC_Os02g34980
OsAffx.12355.1.S1_at--486--1471Chr02:20975611..20975635 (25 bp)
AGAATGTCTGCAGACTCTGTCCATG
LOC_Os02g34980
OsAffx.12355.1.S1_at--117--1411Chr02:20975622..20975646 (25 bp)
AGACTCTGTCCATGGCTCCATGTTG
LOC_Os02g34980
OsAffx.12355.1.S1_at--15--8711Chr02:20975628..20975652 (25 bp)
TGTCCATGGCTCCATGTTGCTGTCT
LOC_Os02g34980
OsAffx.12355.1.S1_at--840--8431Chr02:20975654..20975678 (25 bp)
GGCCTTGAAGCATGAAGAGGGAACA
LOC_Os02g34980
OsAffx.12355.1.S1_at--51--5371Chr02:20975667..20975691 (25 bp)
GAAGAGGGAACAGCCACCATCAATG
LOC_Os02g34980
OsAffx.12355.1.S1_at--937--1071Chr02:20975671..20975695 (25 bp)
AGGGAACAGCCACCATCAATGGCCT
LOC_Os02g34980
OsAffx.12355.1.S1_at--429--9731Chr02:20975686..20975710 (25 bp)
TCAATGGCCTCCCGACAGTCAGCAT
LOC_Os02g34980
Target Sequence 
TTTGGAAGCACCTCAACGTGGCCATTCCTTCATCACAAGAGAGATCATGCAAGAATGTCTGCAGACTCTGTCCATGGCTC
CATGTTGCTGTCTGGGCCTTGAAGCATGAAGAGGGAACAGCCACCATCAATGGCCTCCCGACAGTCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis