Browse Element(s) Details


OsAffx.12370.1.S1_at

Description gb:NM_187358.1
DB_XREF= gi:34901801
GEN=OJ1457_D07.13
TID=OsAffx.12370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1457_D07.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g313602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12370.1.S1_at--771--4131Chr07:18575228..18575371 (25 bp)
CGCTCTGTTTCTATCATATCCAAGG
NONE
OsAffx.12370.1.S1_at--339--8772Chr07:18575233..18575376 (25 bp)
TGTTTCTATCATATCCAAGGAGTAT
NONE
OsAffx.12370.1.S1_at--647--1633Chr07:18575644..18575668 (25 bp)
AGCGTCCATACGGAAATACGTACGA
NONE
OsAffx.12370.1.S1_at--903--5613Chr07:18575670..18575694 (25 bp)
GACAAACGGCATGGATGGCGATTCA
NONE
OsAffx.12370.1.S1_at--475--833Chr07:18575680..18575704 (25 bp)
ATGGATGGCGATTCAGACGTACATA
NONE
OsAffx.12370.1.S1_at--589--10514Chr07:18575691..18575715 (25 bp)
TTCAGACGTACATAATGGCATGGTT
NONE
OsAffx.12370.1.S1_at--800--2753Chr07:18575725..18575749 (25 bp)
AAGAAATTGCGATGGCACCTAGCCG
NONE
OsAffx.12370.1.S1_at--1109--5071Chr07:18575739..18575763 (25 bp)
GCACCTAGCCGGTTTCGCTAATTAT
NONE
OsAffx.12370.1.S1_at--907--4251Chr07:18575747..18575771 (25 bp)
CCGGTTTCGCTAATTATAATGGCAT
NONE
OsAffx.12370.1.S1_at--421--10171Chr07:18575771..18575795 (25 bp)
TATTTCCAAATAGCCGAAGTTGCAA
NONE
OsAffx.12370.1.S1_at--74--4231Chr07:18575784..18575808 (25 bp)
CCGAAGTTGCAATGGAATGATTCCA
NONE
Target Sequence 
CGCTCTGTTTCTATCATATCCAAGGAGTATATTCGAGTTCAAGTTACTCATGGTATCGACGAAATAGGAGGAATCGAGCC
TCCCAGATCCATCCCCTCCATCGGCAATTTCGCTGCGCACGATGATGTCGTAGGGGAGCTTGCGATCTTCAGGGGAACTT
CTACATCGTGGGTCGTCGTCGCCGTCGAGATCGCCGTCGGCGAGCTAGGGTTTGCAGACAATGGGGAATGGGGAACAGAG
ATGGTTAAGCCGGACCGGGATGGCTGGCTGGCTTGTATCGTCTCAGCCAGGGGCACAAGCGTCCATACGGAAATACGTAC
GAGGACAAACGGCATGGATGGCGATTCAGACGTACATAATGGCATGGTTCCAATTTGGAAGAAATTGCGATGGCACCTAG
CCGGTTTCGCTAATTATAATGGCATATTTCCAAATAGCCGAAGTTGCAATGGAATGATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis