Browse Element(s) Details


OsAffx.1263.1.S1_at

Description gb:NM_188541.1
DB_XREF= gi:34904165
GEN=P0492F05.7
TID=OsAffx.1263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0492F05.7 (P0492F05.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g481901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48140Os.49886.1.S1_at10/115+27511055..27515513expressed protein
LOC_Os05g48150Os.3435.1.S1_at10/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48150Os.3435.2.S1_x_at9/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1263.1.S1_at--999--10751Chr01:6870417..6870441 (25 bp)
TTGTTGCCGTGGTGGACGACTGTAC
NONE
OsAffx.1263.1.S1_at--830--451Chr01:6870927..6870951 (25 bp)
ATCTCACATCGTCAGATCACGCGGG
NONE
OsAffx.1263.1.S1_at--806--10191Chr01:6871393..6871417 (25 bp)
TATATTACTCAACCAGCATCCTGGC
NONE
OsAffx.1263.1.S1_at--816--4971Chr01:6871408..6871432 (25 bp)
GCATCCTGGCTTACAAAACGCGAGA
NONE
OsAffx.1263.1.S1_at--185--691Chr01:6871620..6871815 (25 bp)
ATGACCGTCAGCATCTTCGAACACT
NONE
OsAffx.1263.1.S1_at--146--771Chr01:6871832..6871856 (25 bp)
ATGTCTCGCTTTCGATATCTACGAC
NONE
OsAffx.1263.1.S1_at--647--5291Chr01:6872587..6872611 (25 bp)
GAAGGCGGTATGGTGCCATCATGAT
NONE
OsAffx.1263.1.S1_at--985--391Chr01:6872604..6872628 (25 bp)
ATCATGATGCTAGCTTTTACCCGGG
NONE
OsAffx.1263.1.S1_at--576--10332Chr05:27534219..27534238 (20 bp)
TTTACCCGGGTAATAGCGAGCTCCA
LOC_Os05g48190
OsAffx.1263.1.S1_at--485--3092Chr01:6872647..6872671 (25 bp)
AATAGCTAGCATTGGCCTTCACATC
NONE
OsAffx.1263.1.S1_at--163--9611Chr01:6873039..6873063 (25 bp)
TCATCATGTACCCACTAAGTCTAAA
NONE
Target Sequence 
TTGTTGCCGTGGTGGACGACTGTACGTGTGAATGTTCGTTGAAGAACGAGAGATGGATGGACGAAAGGGGCATCTCACAT
CGTCAGATCACGCGGGGTAGTGGTGGACGACTGTACGTGCGCGTGGGGGGGAGAGAAATATATTACTCAACCAGCATCCT
GGCTTACAAAACGCGAGATAAAGGTATTTCACTTAAAAATCAGCGCAAACCTTACAAAATCATGACCGTCAGCATCTTCG
AACACTGGATCGGTGTATACAAATGTCTCGCTTTCGATATCTACGACGGAAAGAAAATCAACTGTAAACGTTGGGGGTCA
AATCCACCCGAACGCACGCCGGCTGCGCCCATTAAGAAGGCGGTATGGTGCCATCATGATGCTAGCTTTTACCCGGGTAA
TAGCGAGCTCCACGTAATAGCTAGCATTGGCCTTCACATCGCCTTCCGTGCCGTGACGTCAGTGGTGGTTGGAGGTTGTA
ACCTACTGAAGTTAAAACTCAACATGCAAACATGCCACCTCATCATGTACCCACTAAGTCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis