Browse Element(s) Details


OsAffx.12630.1.S1_at

Description tigr:9630.m05329
TID=OsAffx.12630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=subtilisin serine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5384011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed
LOC_Os02g53870Os.51349.1.S1_at11/112+32985610..32986341expressed protein
LOC_Os02g53870Os.55356.1.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53870Os.35710.2.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53880NANA2+32987710..32987913hypothetical protein
LOC_Os02g53890NANA2+32989888..32990268hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12630.1.S1_at--1077--4231Chr02:32971525..32971549 (25 bp)
CCGTAGACGCGGTGATTGGTGTCAT
LOC_Os02g53840
OsAffx.12630.1.S1_at--36--10171Chr02:32971561..32971585 (25 bp)
TATATCCGAAAGACCGTGCGTCCTT
LOC_Os02g53840
OsAffx.12630.1.S1_at--172--1751Chr02:32971623..32971647 (25 bp)
ACCTTCCGTGGTAGTTGCGTGTCGT
LOC_Os02g53840
OsAffx.12630.1.S1_at--60--8731Chr02:32971642..32971666 (25 bp)
TGTCGTCGTTTCGTGATTCCAATGC
LOC_Os02g53840
OsAffx.12630.1.S1_at--1100--71Chr02:32971657..32971681 (25 bp)
ATTCCAATGCCAGCGCTTACTGCAA
LOC_Os02g53840
OsAffx.12630.1.S1_at--847--4911Chr02:32971688..32971712 (25 bp)
GCTTGTGGGAGCAAAGACGTTCTAC
LOC_Os02g53840
OsAffx.12630.1.S1_at--1159--6131Chr02:32971748..32971772 (25 bp)
GAGGGTGCAGACCAAGTCACCGCTA
LOC_Os02g53840
OsAffx.12630.1.S1_at--653--7091Chr02:32971763..32971787 (25 bp)
GTCACCGCTAGACCAGGAATCCTAA
LOC_Os02g53840
OsAffx.12630.1.S1_at--789--8171Chr02:32971778..32971802 (25 bp)
GGAATCCTAATTGACGCGTACGCGC
LOC_Os02g53840
OsAffx.12630.1.S1_at--218--3311Chr02:32971808..32971832 (25 bp)
CACACGGCCCAAGACATGGTTAGTT
LOC_Os02g53840
OsAffx.12630.1.S1_at--744--6871Chr02:32971858..32971882 (25 bp)
GTATAAGCTTTTAACCCATATTTGA
LOC_Os02g53840
Target Sequence 
CCGTAGACGCGGTGATTGGTGTCATAGACACGGGTATATATCCGAAAGACCGTGCGTCCTTTGCACCTGACCCATCTCTG
CCCCCAACACCGCCTCCCACCTTCCGTGGTAGTTGCGTGTCGTCGTTTCGTGATTCCAATGCCAGCGCTTACTGCAACAA
CAAGCTTGTGGGAGCAAAGACGTTCTACCGGGGATACGAGGCACAAAATGGGCCAATAGATGAGAGGGTGCAGACCAAGT
CACCGCTAGACCAGGAATCCTAATTGACGCGTACGCGCCGGCCCACACGGCCCAAGACATGGTTAGTTCTTTTTTCCGAA
TTTTTTCATATATGTATAAGCTTTTAACCCATATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis