Browse Element(s) Details


OsAffx.12634.1.S1_at

Description tigr:9630.m05359
TID=OsAffx.12634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5410011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12634.1.S1_at--482--10591Chr02:33135108..33135132 (25 bp)
TTCTCCGGCATCAGGTCAGGGCGCG
LOC_Os02g54100
OsAffx.12634.1.S1_at--226--5918Chr10:16965691..16965715 (25 bp)
GAGCTCCGTCCATCGAGAGGCTGCT
NONE
OsAffx.12634.1.S1_at--777--2911Chr02:33135369..33135393 (25 bp)
AAGGATGTCACCGTCATCGACTGCA
LOC_Os02g54100
OsAffx.12634.1.S1_at--926--8451Chr02:33135444..33135468 (25 bp)
TGGCCGTCCGGTGAGACGATCAAGC
LOC_Os02g54100
OsAffx.12634.1.S1_at--396--6451Chr02:33135461..33135485 (25 bp)
GATCAAGCCAAGGATGGCCTCCTCG
LOC_Os02g54100
OsAffx.12634.1.S1_at--127--4111Chr02:33135500..33135524 (25 bp)
CGACATGGACCATGGCTATGCCATT
LOC_Os02g54100
OsAffx.12634.1.S1_at--930--9491Chr02:33135531..33135687 (25 bp)
TCTCCACAGGGTTGCTCTTTGCAAA
LOC_Os02g54100
OsAffx.12634.1.S1_at--10--9091Chr02:33135675..33135699 (25 bp)
TGCTCTTTGCAAAGCCTTGTGGTTG
LOC_Os02g54100
OsAffx.12634.1.S1_at--1111--7891Chr02:33135695..33135719 (25 bp)
GGTTGCATCTCCTGCAAAGTCTGAA
LOC_Os02g54100
OsAffx.12634.1.S1_at--713--3851Chr02:33135715..33135739 (25 bp)
CTGAACTGCATGAGATAGACCCACA
LOC_Os02g54100
OsAffx.12634.1.S1_at--581--2431Chr02:33135852..33135873 (22 bp)
AAAAGCTCATCGGTCGTTCTTCTCG
LOC_Os02g54100
Target Sequence 
TTCTCCGGCATCAGGTCAGGGCGCGGCTCCCCTCCCAGCAGCGCGCCAGCTTCCTACATCTCGCGAGCTCCGTCCATCGA
GAGGCTGCTCGAGGAGGACGCCGCGCTGCTGCGCAAGAAGCGGCAGCAGAGCGCCGACAAGCTCGCCCTGATGGCGATGA
CGACGACGACGATGTCCACCCCGCCGGCCAGGGTCTCCGGCGCGGCGCGGTCGCGAGGATTCAAGAGCTTCTTGAGCTTC
GGGAAGAAGAACAGACGAGGCAAGGATGTCACCGTCATCGACTGCACCTCGCCGTCGGTGCCCTCGGTGGCCGACGACGA
CAGCGGCAGCGGAGGGTGGCCGTCCGGTGAGACGATCAAGCCAAGGATGGCCTCCTCGGACGCTGCCTCCGACGACATGG
ACCATGGCTATGCCATTGCCGCCTCTCCACAGGGTTGCTCTTTGCAAAGCCTTGTGGTTGCATCTCCTGCAAAGTCTGAA
CTGCATGAGATAGACCCACAGGAGAAATCACCAAAAGCTCATCGGTCGTTCTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis