Browse Element(s) Details


OsAffx.1264.1.S1_x_at

Description gb:NM_188538.1
DB_XREF= gi:34904159
GEN=P0417G05.23
TID=OsAffx.1264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0417G05.23 (P0417G05.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g285101/11expressed protein
LOC_Os02g568801/11Transcriptional corepressor LEUNIG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1264.1.S1_x_at--592--9135Chr10:17073120..17073141 (22 bp)
TGCTGGCGGTTGATGGGATATCTAA
NONE
OsAffx.1264.1.S1_x_at--962--46711Chr11:937983..938007 (25 bp)
GCGGTTGATGGGATATCTAAAAACT
NONE
OsAffx.1264.1.S1_x_at--896--9811Chr01:6852595..6852619 (25 bp)
TAAAAGGAAGGACGACGGACATGTC
NONE
OsAffx.1264.1.S1_x_at--455--3951Chr01:6852610..6852634 (25 bp)
CGGACATGTCGTGAATCAATCGGTT
NONE
OsAffx.1264.1.S1_x_at--182--5671Chr01:6852612..6852636 (25 bp)
GACATGTCGTGAATCAATCGGTTAA
NONE
OsAffx.1264.1.S1_x_at--748--3191Chr01:6852626..6852716 (25 bp)
CAATCGGTTAAGACGGTTGTGACAA
NONE
OsAffx.1264.1.S1_x_at--468--9411Chr01:6852629..6852719 (25 bp)
TCGGTTAAGACGGTTGTGACAATAA
NONE
OsAffx.1264.1.S1_x_at--257--1472Chr03:35083974..35083994 (21 bp)
AGAAGGGTGGCAACGGACGAGTCAT
NONE
OsAffx.1264.1.S1_x_at--833--2553Chr12:3512412..3512432 (21 bp)
AACGGACGAGTCATAGAGGAGTACA
NONE
OsAffx.1264.1.S1_x_at--1160--3914Chr07:10152698..10153062 (25 bp)
CGGACGAGTCATAGAGGAGTACAGT
NONE
OsAffx.1264.1.S1_x_at--61--60923Chr12:23606698..23606722 (25 bp)
GAGTACAGTGACAAAGTCGCTGACA
NONE
Target Sequence 
TGCTGGCGGTTGATGGGATATCTAAAAACTATTAATAAAACACCAAATAGAATCCTAACGACAATTAAAAGGAAGGACGA
CGGACATGTCGTGAATCAATCGGTTAAGACGGTTGTGACAATAAAGAAGGGTGGCAACGGACGAGTCATAGAGGAGTACA
GTGACAAAGTCGCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1264.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis