Browse Element(s) Details


OsAffx.12647.1.S1_at

Description tigr:9630.m05453
TID=OsAffx.12647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5493011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein
LOC_Os02g54950OsAffx.29313.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54950Os.14919.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54960OsAffx.3076.1.S1_s_at11/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54960OsAffx.3076.1.S1_at9/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12647.1.S1_at--385--4632Chr02:33635648..33635672 (25 bp)
GCGATGCACGCGGAATTTCACTTGC
LOC_Os02g54930
OsAffx.12647.1.S1_at--276--3671Chr02:33635676..33635700 (25 bp)
CTTATCTTCTGCATCTCCATCTGAG
LOC_Os02g54930
OsAffx.12647.1.S1_at--854--2052Chr03:14891805..14891825 (21 bp)
ACTTCTCCAATGACGATGGCCAAGG
NONE
OsAffx.12647.1.S1_at--751--2852Chr02:33635771..33635793 (23 bp)
AAGTCCCAACATCGACAGCTGTGTG
LOC_Os02g54930
OsAffx.12647.1.S1_at--484--331Chr02:33636643..33636667 (25 bp)
ATAAACGTCCTGTCAAAATTTGTGG
LOC_Os02g54930
OsAffx.12647.1.S1_at--1011--10194Chr02:33636678..33636702 (25 bp)
TATTCAACTTGCTACCATGCATCTA
LOC_Os02g54930
OsAffx.12647.1.S1_at--561--5414Chr02:33637286..33637309 (24 bp)
GAAGCTGGCACCATCCAAACCAGGG
LOC_Os02g54930
OsAffx.12647.1.S1_at--714--8632Chr02:33638068..33638092 (25 bp)
TGGGCTAAGTCTTTTGCCCAGCCAG
LOC_Os02g54930
OsAffx.12647.1.S1_at--35--6431Chr02:33638272..33638296 (25 bp)
GATCTAACAATAGCGCTGTGGCAAG
LOC_Os02g54930
OsAffx.12647.1.S1_at--792--5334Chr05:10891659..10891683 (25 bp)
GAAGTCAATTTCAGGGCCATCTTTT
NONE
OsAffx.12647.1.S1_at--59--4433Chr05:10891674..10891698 (25 bp)
GCCATCTTTTTATGCGAACTTGGAG
NONE
Target Sequence 
GCGATGCACGCGGAATTTCACTTGCCGCCTTATCTTCTGCATCTCCATCTGAGTGCCTCTGGTTCCCCAGGACCTACTCT
GCAGCGCCACTTCTCCAATGACGATGGCCAAGGGAAATACAAAAAGTCCCAACATCGACAGCTGTGTGACAATTATGAAA
TAAACGTCCTGTCAAAATTTGTGGTTTCATTTTTTATTCAACTTGCTACCATGCATCTAAGATCTTATCAACAAGGAAGC
TGGCACCATCCAAACCAGGGCTTATATGTATACTGGGCTAAGTCTTTTGCCCAGCCAGCTCGCCTATGGAAACGGCGAAA
GGAACCAGAAGATCTAACAATAGCGCTGTGGCAAGCATGGAACAAGATGGAGCCTGAAGCAAAATTCTCAAAACACCATT
TGAAGTCAATTTCAGGGCCATCTTTTTATGCGAACTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis