Browse Element(s) Details


OsAffx.12670.1.S1_at

Description tigr:9630.m05621
TID=OsAffx.12670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5663011/11Calcium binding EGF domain containing protein
LOC_Os07g073901/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56620OsAffx.12669.1.S1_at10/112+34691165..34693845hypothetical protein
LOC_Os02g56630OsAffx.12670.1.S1_at11/112+34714997..34717490Calcium binding EGF domain containing protein
LOC_Os02g56640NANA2+34720740..34724177retrotransposon protein, putative, unclassified
LOC_Os02g56650OsAffx.22492.1.S1_at1/112+34724875..34726653retrotransposon protein, putative, unclassified
LOC_Os02g56650OsAffx.22492.1.S1_x_at1/112+34724875..34726653retrotransposon protein, putative, unclassified
LOC_Os02g56660Os.31312.5.S1_x_at4/112+34727274..34730692retrotransposon protein, putative, unclassified
LOC_Os02g56660Os.31312.2.S1_x_at2/112+34727274..34730692retrotransposon protein, putative, unclassified
LOC_Os02g56670OsAffx.24897.1.S1_at9/112+34733944..34735265hypothetical protein
LOC_Os02g56680Os.6757.1.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56680OsAffx.24898.2.S1_at1/112+34736625..34738103NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12670.1.S1_at--1087--3211Chr02:34716920..34716944 (25 bp)
CAAGTTTAACGCCAAAGTTTCTGAT
LOC_Os02g56630
OsAffx.12670.1.S1_at--388--10431Chr02:34717033..34717057 (25 bp)
TTATGACATGCCAGTTGACTGATAA
LOC_Os02g56630
OsAffx.12670.1.S1_at--210--2352Chr07:3690544..3690563 (20 bp)
AAAGCATTGTACTTGGACGGGCCAG
LOC_Os07g07390
OsAffx.12670.1.S1_at--780--3511Chr02:34717156..34717180 (25 bp)
CATGCTTCACCACAGCAATGAAAGT
LOC_Os02g56630
OsAffx.12670.1.S1_at--188--2151Chr02:34717167..34717191 (25 bp)
ACAGCAATGAAAGTTGGTCGCCATC
LOC_Os02g56630
OsAffx.12670.1.S1_at--592--6611Chr02:34717179..34717203 (25 bp)
GTTGGTCGCCATCAAGAGCTACTAG
LOC_Os02g56630
OsAffx.12670.1.S1_at--350--691Chr02:34717219..34717243 (25 bp)
ATGAGATGAGCGCTGAAATGCTAGA
LOC_Os02g56630
OsAffx.12670.1.S1_at--888--1452Chr10:10975690..10975717 (23 bp)
AGAAGAGATCACATACCTCCTGATG
NONE
OsAffx.12670.1.S1_at--1051--4251Chr02:34717259..34717283 (25 bp)
CCTGATGCGATGCATAAGCATGAAT
LOC_Os02g56630
OsAffx.12670.1.S1_at--813--5091Chr02:34717349..34717373 (25 bp)
GCACCCATGGGCTGAAGCTGAAGAC
LOC_Os02g56630
OsAffx.12670.1.S1_at--573--5131Chr02:34717419..34717443 (25 bp)
GCAAATTACCAACTCGAGCAACAAA
LOC_Os02g56630
Target Sequence 
CAAGTTTAACGCCAAAGTTTCTGATTTTGGGGCATCAAAGCTAGCACCAACTGATGAGGCCGAGATTGCAACGTTGGTGC
AGGGAACTTGCGGGTACTTGGACCCCGAATACCTTATGACATGCCAGTTGACTGATAAGAGCGATGTTTACAGTTTTGGT
GTCGTCATGCTAGAGCTTCTGACAAGGAAGAAAGCATTGTACTTGGACGGGCCAGAGGAAAACAGGAGCCTGGTGTCATG
CTTCACCACAGCAATGAAAGTTGGTCGCCATCAAGAGCTACTAGATAGCCAAGTAAGGAATGAGATGAGCGCTGAAATGC
TAGAAGAGATCACATACCTCCTGATGCGATGCATAAGCATGAATGGAGAAGAACGGCCAACGATGAAAGAGGTTGCTGAG
AGGCTGGAGATGTTAAGGAGATACCAGCAGCACCCATGGGCTGAAGCTGAAGACAATGCAGAGGAGATTGAGAGCTTGCT
CGGCAGGGAACAACAGAATGCAAATTACCAACTCGAGCAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis