Browse Element(s) Details


OsAffx.12696.1.S1_at

Description tigr:9630.m05881
TID=OsAffx.12696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MJG14.22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4591011/11tRNA-splicing endonuclease positive effector, putative
LOC_Os01g709701/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein
LOC_Os02g45960Os.35344.18.S1_x_at11/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960Os.35344.3.S1_x_at9/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_x_at4/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_at3/112+27994680..28001388transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12696.1.S1_at--592--5731Chr02:27972260..27972284 (25 bp)
GACTGTGTGTCAGCGATGCAGCAGC
LOC_Os02g45910
OsAffx.12696.1.S1_at--975--5351Chr02:27972192..27972216 (25 bp)
GAAGACGAAGACCATCAGCACGCTC
LOC_Os02g45910
OsAffx.12696.1.S1_at--739--4791Chr02:27972171..27972195 (25 bp)
GCTCCTGTGGGCAATGCTGGTCAAG
LOC_Os02g45910
OsAffx.12696.1.S1_at--337--6171Chr02:27972071..27972095 (25 bp)
GAGGATCCTTCTGCTGGCAGTGGAA
LOC_Os02g45910
OsAffx.12696.1.S1_at--549--6111Chr02:27972033..27972057 (25 bp)
GAGTGATGTTGTGCTGTTCGGAAAT
LOC_Os02g45910
OsAffx.12696.1.S1_at--21--8991Chr02:27971998..27972022 (25 bp)
TGAACGTGGACGGAAACCTGACAAA
LOC_Os02g45910
OsAffx.12696.1.S1_at--669--9331Chr02:27971952..27971976 (25 bp)
TCGCCGACTGCAGAAGTGCCTGAGT
LOC_Os02g45910
OsAffx.12696.1.S1_at--469--3451Chr02:27971907..27971931 (25 bp)
CAGTCTGAGCTCCATGATACGGATT
LOC_Os02g45910
OsAffx.12696.1.S1_at--106--6491Chr02:27971892..27971916 (25 bp)
GATACGGATTCTTGAGCAACCTCTG
LOC_Os02g45910
OsAffx.12696.1.S1_at--573--3252Chr02:27971876..27971900 (25 bp)
CAACCTCTGGTTCAGTATGATTCAT
LOC_Os02g45910
OsAffx.12696.1.S1_at--603--6171Chr02:27971756..27971780 (25 bp)
GAGGATGTTCCTAAGGTCATACCAA
LOC_Os02g45910
Target Sequence 
GACTGTGTGTCAGCGATGCAGCAGCGGAGCTCTTCCGTGCGCCTGATCTGGGGTCCTCCCGGGACAGGGAAGACGAAGAC
CATCAGCACGCTCCTGTGGGCAATGCTGGTCAAGAACCACAGGACACTGACCTGCGCTCCGACGAACACCGCCGTCGTCG
AGGTCGCATCTCGGGTCCTCAATCTCCTCGAGGATCCTTCTGCTGGCAGTGGAAAAGCCTGTTTTTTGAGTGATGTTGTG
CTGTTCGGAAATGAGGATCGGATGAACGTGGACGGAAACCTGACAAAGATCTTCTTGGAGAAGCGCGCTCGCCGACTGCA
GAAGTGCCTGAGTCCAGGTTCAGGGTGGGTGCACAGTCTGAGCTCCATGATACGGATTCTTGAGCAACCTCTGGTTCAGT
ATGATTCATATGTGGAGCAAATTGAAAGGGAGATAGAAGAGGATCTTGCTGAGAAGAAAAGGAACAAAAACAAGAACAAG
GAGAATGATAAAAAGCAGGTAAAGGAGGATGTTCCTAAGGTCATACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis