Browse Element(s) Details


OsAffx.12763.1.S1_at

Description tigr:9631.m00656
TID=OsAffx.12763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0726011/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12763.1.S1_at--159--51Chr03:3684850..3684874 (25 bp)
ATTGTCCACGCGTCAAGGGACATCA
LOC_Os03g07260
OsAffx.12763.1.S1_at--183--7651Chr03:3684819..3684843 (25 bp)
GGGAGGAGATCACATTCGCCTACTT
LOC_Os03g07260
OsAffx.12763.1.S1_at--990--8411Chr03:3684745..3684769 (25 bp)
GGCCTCGAATGCCAATGCGATCGGT
LOC_Os03g07260
OsAffx.12763.1.S1_at--1075--491Chr03:3684726..3684750 (25 bp)
ATCGGTGCAGGTTCGAAGCCAGCGA
LOC_Os03g07260
OsAffx.12763.1.S1_at--1022--1691Chr03:3684710..3684734 (25 bp)
AGCCAGCGACGCCATTGTTGGGCAA
LOC_Os03g07260
OsAffx.12763.1.S1_at--54--8811Chr03:3684695..3684719 (25 bp)
TGTTGGGCAAGAACTCACAAAACTT
LOC_Os03g07260
OsAffx.12763.1.S1_at--885--2591Chr03:3684667..3684691 (25 bp)
AACGAATTGGTCAATGGCCGAGGAG
LOC_Os03g07260
OsAffx.12763.1.S1_at--143--4651Chr03:3684559..3684583 (25 bp)
GCGTCGTTCTGGAGCGCGTACTCCG
LOC_Os03g07260
OsAffx.12763.1.S1_at--150--8811Chr03:3684531..3684555 (25 bp)
TGTTCGACTCCGACAAGCTGGTGAG
LOC_Os03g07260
OsAffx.12763.1.S1_at--491--3191Chr03:3684383..3684407 (25 bp)
CAATCGGCTCGAGGTGGAAGACAAG
LOC_Os03g07260
OsAffx.12763.1.S1_at--438--8211Chr03:3684311..3684335 (25 bp)
GGCAATGAGAGCTCTCTTCAGACTT
LOC_Os03g07260
Target Sequence 
ATTGTCCACGCGTCAAGGGACATCAAAGCCGGGGAGGAGATCACATTCGCCTACTTCGACGTGCTCACCCCGGCGAGCAA
GCGCAGGGAGGCAGCGAGAGCGTGGGGCCTCGAATGCCAATGCGATCGGTGCAGGTTCGAAGCCAGCGACGCCATTGTTG
GGCAAGAACTCACAAAACTTGAGAACGAATTGGTCAATGGCCGAGGAGGAGACATGGGAGCACTGGTGGTGAGGCTGGAG
GAGAGGATGAGAAAGTCCATGGTGAAGGAGAGGAGGAAGGCGTTCTTGCGCGCGTCGTTCTGGAGCGCGTACTCCGCGCT
GTTCGACTCCGACAAGCTGGTGAGGAAGTGGGGGAGGCGCGTCCCCGGTGAGGCCGCCGTCGCAGAGAGCGTCGCCGGCG
CAATCGGCGGGAACGAGAGCGTGCTGAGGGCAATGCTGAGGGGTGCCGACAATGGCAACGGCTGCGGCAATCGGCTCGAG
GTGGAAGACAAGGTGGTGAGGATTGGGAGGGCTACCTATGGCAGGGTAGTGAAGAGGCAGGCAATGAGAGCTCTCTTCAG
ACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis