Browse Element(s) Details


OsAffx.12768.1.S1_at

Description tigr:9631.m00697
TID=OsAffx.12768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0762011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein
LOC_Os03g07660OsAffx.25011.1.S1_at11/113+3872158..3872520hypothetical protein
LOC_Os03g07670NANA3+3873943..3877272transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12768.1.S1_at--546--10291Chr03:3853604..3853628 (25 bp)
TTTCTGTCATATTCACCGCTGCGTT
LOC_Os03g07620
OsAffx.12768.1.S1_at--1060--212Chr06:23401287..23401434 (24 bp)
ATATTCACCGCTGCGTTGCTTGCCG
NONE
OsAffx.12768.1.S1_at--455--4771Chr03:3853587..3853611 (25 bp)
GCTGCGTTGCTTGCCGTTGCCAAAG
LOC_Os03g07620
OsAffx.12768.1.S1_at--585--6671Chr03:3853582..3853606 (25 bp)
GTTGCTTGCCGTTGCCAAAGCAGAT
LOC_Os03g07620
OsAffx.12768.1.S1_at--819--10691Chr03:3853577..3853601 (25 bp)
TTGCCGTTGCCAAAGCAGATGGCGG
LOC_Os03g07620
OsAffx.12768.1.S1_at--26--4411Chr03:3853569..3853593 (25 bp)
GCCAAAGCAGATGGCGGCAGCGTCA
LOC_Os03g07620
OsAffx.12768.1.S1_at--697--3971Chr03:3853457..3853481 (25 bp)
CGGTGCGCATCTACGGGCTGAGCAC
LOC_Os03g07620
OsAffx.12768.1.S1_at--381--9931Chr03:3853446..3853470 (25 bp)
TACGGGCTGAGCACGAACAAGACGT
LOC_Os03g07620
OsAffx.12768.1.S1_at--39--4751Chr03:3853441..3853465 (25 bp)
GCTGAGCACGAACAAGACGTACCTG
LOC_Os03g07620
OsAffx.12768.1.S1_at--418--1891Chr03:3853425..3853449 (25 bp)
ACGTACCTGCGGTTCGTGAACGTGG
LOC_Os03g07620
OsAffx.12768.1.S1_at--643--9971Chr03:3853422..3853446 (25 bp)
TACCTGCGGTTCGTGAACGTGGTGA
LOC_Os03g07620
Target Sequence 
TTTCTGTCATATTCACCGCTGCGTTGCTTGCCGTTGCCAAAGCAGATGGCGGCAGCGTCACGGCCGCCGCCGCGGCGCCG
CCGCCGGCGGCGTGGACGGCGGTGGCGAACGTGAACGACAAGAGCATCCAGCAGGTGGGGCAGTCGGCGGTGCGCATCTA
CGGGCTGAGCACGAACAAGACGTACCTGCGGTTCGTGAACGTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis