Browse Element(s) Details


OsAffx.12783.1.S1_at

Description tigr:9631.m00798
TID=OsAffx.12783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aminotransferase, classes I and II, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0853011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12783.1.S1_at--759--8671Chr03:4364601..4364625 (25 bp)
TGTGTTCAAATATCACCGGCCAGAT
LOC_Os03g08530
OsAffx.12783.1.S1_at--506--4611Chr03:4364572..4364596 (25 bp)
GCGAGCCTCATAATGGATCCACCAA
LOC_Os03g08530
OsAffx.12783.1.S1_at--235--8111Chr03:4364453..4364477 (25 bp)
GGACGCATCTTATGACCTCTACGAG
LOC_Os03g08530
OsAffx.12783.1.S1_at--29--3731Chr03:4364410..4364434 (25 bp)
CTAAAATCTTTATCTCGTCGTGCAA
LOC_Os03g08530
OsAffx.12783.1.S1_at--979--6271Chr03:4364232..4364256 (25 bp)
GATGTATCTGTTCCCACGGATTTAT
LOC_Os03g08530
OsAffx.12783.1.S1_at--221--1771Chr03:4364163..4364187 (25 bp)
ACCTGATGTATTCTACGCTCTACGT
LOC_Os03g08530
OsAffx.12783.1.S1_at--908--8831Chr03:4364133..4364157 (25 bp)
TGATACCACCGGCATCGTTGTGACT
LOC_Os03g08530
OsAffx.12783.1.S1_at--256--7371Chr03:4364114..4364138 (25 bp)
GTGACTCCTGGATCTGGTTTTGGAC
LOC_Os03g08530
OsAffx.12783.1.S1_at--1125--6271Chr03:4363857..4363881 (25 bp)
GATGTTATCTGTTCACCTGCAATTC
LOC_Os03g08530
OsAffx.12783.1.S1_at--268--3151Chr03:4363837..4363861 (25 bp)
AATTCTGAATTCCTGACCACTCAAG
LOC_Os03g08530
OsAffx.12783.1.S1_at--64--8911Chr03:4363775..4363799 (25 bp)
TGAGATGCACGATCCTGCCGCAGGA
LOC_Os03g08530
Target Sequence 
TGTGTTCAAATATCACCGGCCAGATCCTTGCGAGCCTCATAATGGATCCACCAAAGGCTGGGGACGCATCTTATGACCTC
TACGAGGAAGAGAAAGACAACATCCTAAAATCTTTATCTCGTCGTGCAAAGGCAATGGAGTCTGCATTTAACAGTATTGA
TGGAATTACATGCAACAAGACGGAAGGGGCGATGTATCTGTTCCCACGGATTTATCTACCACAGAAGGCAATTGAGGCTG
CCAGGGCTGTCAACAAAGCACCTGATGTATTCTACGCTCTACGTCTTCTTGATACCACCGGCATCGTTGTGACTCCTGGA
TCTGGTTTTGGACAAATCATCAGATGTTATCTGTTCACCTGCAATTCTGAATTCCTGACCACTCAAGTTTGGTCCTTTGT
GAAAGGTTGCAGGGACATGGCACGTGAGATGCACGATCCTGCCGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis