Browse Element(s) Details


OsAffx.12804.1.S1_at

Description tigr:9631.m00908
TID=OsAffx.12804.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1006011/11Chloroplast 30S ribosomal protein S10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12804.1.S1_at--519--2851Chr03:5058429..5058453 (25 bp)
AAGTCTGATGGATCGCCTTAAGATA
LOC_Os03g10060
OsAffx.12804.1.S1_at--543--7331Chr03:5058394..5058418 (25 bp)
GTGCATGCATGTCTATTGATCCTAA
LOC_Os03g10060
OsAffx.12804.1.S1_at--758--10711Chr03:5058379..5058403 (25 bp)
TTGATCCTAAATGCAGGGTTCTGAC
LOC_Os03g10060
OsAffx.12804.1.S1_at--1029--7671Chr03:5058364..5058388 (25 bp)
GGGTTCTGACAATTCATGGTTCTGA
LOC_Os03g10060
OsAffx.12804.1.S1_at--705--10231Chr03:5058333..5058357 (25 bp)
TATTGTGCCATCAGAGGATGCCCTA
LOC_Os03g10060
OsAffx.12804.1.S1_at--578--6171Chr03:5058320..5058344 (25 bp)
GAGGATGCCCTAGAATTTGACAAAT
LOC_Os03g10060
OsAffx.12804.1.S1_at--1149--51Chr03:5058243..5058267 (25 bp)
ATTGCATCACCTTGAGTTGGCTACC
LOC_Os03g10060
OsAffx.12804.1.S1_at--1095--6591Chr03:5058228..5058252 (25 bp)
GTTGGCTACCATTGTACTGAAATTT
LOC_Os03g10060
OsAffx.12804.1.S1_at--149--10491Chr03:5057889..5057909 (21 bp)
TTAATGTTTCTTCCGTTTACCTGTG
LOC_Os03g10060
OsAffx.12804.1.S1_at--280--4011Chr03:5057876..5057900 (25 bp)
CGTTTACCTGTGGAAGTTGCTATTT
LOC_Os03g10060
OsAffx.12804.1.S1_at--915--3011Chr03:5057819..5057864 (25 bp)
AATGCCATTTAGGTTGGCACCCAAG
LOC_Os03g10060
Target Sequence 
AAGTCTGATGGATCGCCTTAAGATAGATATGAAGAGTGCATGCATGTCTATTGATCCTAAATGCAGGGTTCTGACAATTC
ATGGTTCTGATGATGATATTGTGCCATCAGAGGATGCCCTAGAATTTGACAAATATATAAGCAATCATGAATTGAGTATT
ATTGAAGGAGCTGATCATAGATATTCATTGCATCACCTTGAGTTGGCTACCATTGTACTGAAATTTATTAATGTTTCTTC
CGTTTACCTGTGGAAGTTGCTATTTTCTGGAACACTAATGCCATTTAGGTTGGCACCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis