Browse Element(s) Details


OsAffx.12825.1.S1_s_at

Description tigr:9631.m01048
TID=OsAffx.12825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl transferase family 8, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1133011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12825.1.S1_s_at--555--7691Chr03:5808705..5808729 (25 bp)
GGGTAGGCGCATTGGAGTATATCAT
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--846--311Chr03:5808682..5808706 (25 bp)
ATACCGGTTGTGATTCATTTGTTCA
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--961--8971Chr03:5808585..5808609 (25 bp)
TGAACATACCTGACTATGCCCTGGA
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--939--4191Chr03:5808567..5808591 (25 bp)
CCCTGGATCGACTGGCATGCAAATA
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--371--8491Chr03:5808515..5808539 (25 bp)
TGGCTACACGATTCTTTTCATCTGT
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--974--10531Chr03:5808499..5808523 (25 bp)
TTCATCTGTATCATATTGGCGCATC
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--792--8471Chr03:5808483..5808507 (25 bp)
TGGCGCATCATTCTTTTCGACACTA
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--547--6491Chr03:5808446..5808470 (25 bp)
GATAGCTTGGTGAAGTCTCCCTCTG
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--1084--6591Chr03:5808418..5808442 (25 bp)
GATTGGGCTAAATCCTTGACCGCAG
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--933--9311Chr03:5808308..5808332 (25 bp)
TCGCGAGAGTTTATATGTTTTCCCC
LOC_Os03g11330
OsAffx.12825.1.S1_s_at--912--10671Chr03:5808266..5808290 (25 bp)
TTCCTTCTTGATATACTCGAGTCCT
LOC_Os03g11330
Target Sequence 
GGGTAGGCGCATTGGAGTATATCATACCGGTTGTGATTCATTTGTTCACTGGAGAGGCTGATTGCTGTTGGATGGTGGGA
AGATTGGTCAATTCGTTAACAACCAGAACACAATCAGCACTGAACATACCTGACTATGCCCTGGATCGACTGGCATGCAA
ATACTCGAGACTTTTCATCTGTATCATATATGGCTACACGATTCTTTTCATCTGTATCATATTGGCGCATCATTCTTTTC
GACACTATGAACTGCGAAGGATAGCTTGGTGAAGTCTCCCTCTGTGGGATTGGGCTAAATCCTTGACCGCAGAATAATGC
AGCGGAGGGTAGCACAGATTGATCGATCGATCGATTAATTGATCATGGCGAAGTAAGAGAAGGCAGCCACTATGAGGTCG
CGAGAGTTTATATGTTTTCCCCCTCATTTTATTCTTTTTTTCCTTCTTGATATACTCGAGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12825.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis