Browse Element(s) Details


OsAffx.12847.1.S1_s_at

Description tigr:9631.m01320
TID=OsAffx.12847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AB030250 AtRAD17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1385011/11Cell cycle checkpoint protein RAD17, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed
LOC_Os03g13850OsAffx.12847.1.S1_s_at11/113+7485066..7491913Cell cycle checkpoint protein RAD17, putative
LOC_Os03g13860Os.17582.1.S1_at11/113+7493275..7496596GTP-binding protein, putative, expressed
LOC_Os03g13870Os.10099.1.S1_at11/113+7498807..7500531expressed protein
LOC_Os03g13880Os.34131.1.S1_s_at8/113+7506727..7508862hAT family dimerisation domain containing protein
LOC_Os03g13890Os.26886.2.S1_s_at10/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13890Os.26886.6.S1_s_at9/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13890OsAffx.16467.1.S1_at7/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13890OsAffx.3425.1.S1_at1/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13900NANA3+7514214..7520301retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12847.1.S1_s_at--162--6951Chr03:7490368..7490392 (25 bp)
GTAGATGTGGATTCGTTTCCTATGA
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--585--2311Chr03:7490436..7490460 (25 bp)
AAAGGTTCTGTCTCAAGCGCATGGA
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--763--8131Chr03:7490468..7490492 (25 bp)
GGACAGTTGCTGACTTTCTGCATGA
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--818--1251Chr03:7491050..7491074 (25 bp)
AGATTGCCTTCTTGCTGGTAGTCCA
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--661--8551Chr03:7491065..7491089 (25 bp)
TGGTAGTCCAATTTCGTCAACCCGT
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--1114--8951Chr03:7491124..7491148 (25 bp)
TGACACAACTTATTGCTGCTTCCGT
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--551--4031Chr03:7491146..7491170 (25 bp)
CGTTGCAGCACGAGGAATTCTTTTC
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--854--2111Chr03:7491179..7491277 (25 bp)
ACATGTGTCATCATCAAGGTGGCAT
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--130--1051Chr03:7491269..7491293 (25 bp)
AGGTGGCATACAATCCGTAGCCCAA
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--796--6751Chr03:7491747..7491771 (25 bp)
GTTCAAGTACATCTGGTTCTCGCAA
LOC_Os03g13850
OsAffx.12847.1.S1_s_at--996--7891Chr03:7491761..7491785 (25 bp)
GGTTCTCGCAATTTCTCTGATGTAG
LOC_Os03g13850
Target Sequence 
GTAGATGTGGATTCGTTTCCTATGAAAGAAAAACTAAGAAGAAATCCACTCAAAATGGATATTCCAGAAAAGGTTCTGTC
TCAAGCGCATGGAAAAGTGCGGACAGTTGCTGACTTTCTGCATGAAAATGTTCTTGATTTCATTGACAATGATGCTATTG
ATGATGCATGGAGTGTGGCGTCATATTTGAGTGAGGCAGATTGCCTTCTTGCTGGTAGTCCAATTTCGTCAACCCGTTGG
ATGGTAAATGAATCGTATGAAGCGGAAAACATGACACAACTTATTGCTGCTTCCGTTGCAGCACGAGGAATTCTTTTCGG
AAATGCACATGTGTCATCATCAAGGTGGCATACAATCCGTAGCCCAAGAGTTTGGCAGATTGAACAGTCATTTCGATCCA
GAAAGGATCTGATTCTTAGAGAAAGATACGATTGTTCAAGTACATCTGGTTCTCGCAATTTCTCTGATGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12847.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis