Browse Element(s) Details


OsAffx.12857.1.S1_at

Description tigr:9631.m01373
TID=OsAffx.12857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1432010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein
LOC_Os03g14300Os.49217.1.S1_at11/113+7767861..7768646expressed protein
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12857.1.S1_at--135--831Chr03:7775697..7775721 (25 bp)
ATGGTTGCGATGATCTTGGTCGTGC
LOC_Os03g14320
OsAffx.12857.1.S1_at--1049--4111Chr03:7775735..7775759 (25 bp)
CGCATCTGCCAGTGACAACGACGAG
LOC_Os03g14320
OsAffx.12857.1.S1_at--637--8371Chr03:7775765..7775789 (25 bp)
GGCGTTGTTCAACATCCTGCAACAG
LOC_Os03g14320
OsAffx.12857.1.S1_at--192--2091Chr03:7775776..7775800 (25 bp)
ACATCCTGCAACAGAAGCCCGGGAA
LOC_Os03g14320
OsAffx.12857.1.S1_at--1133--811Chr03:7776493..7776517 (25 bp)
ATGGTACTACCTCTACTATGCTGAT
LOC_Os03g14320
OsAffx.12857.1.S1_at--729--611Chr03:7776510..7776534 (25 bp)
ATGCTGATATCGAGCCTGTTCACTT
LOC_Os03g14320
OsAffx.12857.1.S1_at--944--2631NONE
AACCATACTATTTTTGGCTACCAAG
NONE
OsAffx.12857.1.S1_at--770--4971Chr03:7777798..7777822 (25 bp)
GCATCTCCTATTTGCTTTGTCAACC
LOC_Os03g14320
OsAffx.12857.1.S1_at--856--10231Chr03:7777813..7777837 (25 bp)
TTTGTCAACCTTCTTCCTAGCGTCG
LOC_Os03g14320
OsAffx.12857.1.S1_at--543--7231Chr03:7777834..7777858 (25 bp)
GTCGCACCACCACTCAATGAAGCAA
LOC_Os03g14320
OsAffx.12857.1.S1_at--688--2911Chr03:7777924..7777948 (25 bp)
AAGGATGTGGTCGATGGTTTCTTTT
LOC_Os03g14320
Target Sequence 
ATGGTTGCGATGATCTTGGTCGTGCGCATCATCGCCTTCGCATCTGCCAGTGACAACGACGAGCTGCCGGCGTTGTTCAA
CATCCTGCAACAGAAGCCCGGGAAGGCTGCACAGCCGTCATGGTACTACCTCTACTATGCTGATATCGAGCCTGTTCACT
TTGATATCATTTTCAACCATACTATTTTTGGCTACCAAGATGACAATGGTGTCAAAGCATCTCCTATTTGCTTTGTCAAC
CTTCTTCCTAGCGTCGCACCACCACTCAATGAAGCAAGCATTGTTGGAGGGGAAGTAAAGGGGCTGTCAAATGGTGTGGA
GCTTGGATTTGGGGCAGTCGAGAAGGATGTGGTCGATGGTTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis