Browse Element(s) Details


OsAffx.12906.1.S1_at

Description tigr:9631.m01772
TID=OsAffx.12906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087039 rhodanese-like family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1802011/11rhodanese-like family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os03g18020OsAffx.12906.1.S1_at11/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18020Os.41415.2.S1_x_at1/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18030Os.17112.1.S1_at11/113+10017919..10023212oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g18040OsAffx.12907.1.S1_at10/113+10023756..10024847hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12906.1.S1_at--1111--2851Chr03:10007456..10007480 (25 bp)
AAGTGGGTCCACTTCGGCTACATCG
LOC_Os03g18020
OsAffx.12906.1.S1_at--631--9791Chr03:10007474..10007498 (25 bp)
TACATCGGCCTCTGGACCGGCCAGT
LOC_Os03g18020
OsAffx.12906.1.S1_at--687--8531Chr03:10007486..10007510 (25 bp)
TGGACCGGCCAGTCCTTCACCAAGA
LOC_Os03g18020
OsAffx.12906.1.S1_at--416--10511Chr03:10007501..10007525 (25 bp)
TTCACCAAGATGAACGACCGCTTCC
LOC_Os03g18020
OsAffx.12906.1.S1_at--913--4251Chr03:10007547..10007571 (25 bp)
CCGGCGAAGGCAAGGACGCCAAGCT
LOC_Os03g18020
OsAffx.12906.1.S1_at--562--4111Chr03:10007587..10007904 (25 bp)
CGAAGGCCTCCGGTCGTTGATCGCG
LOC_Os03g18020
OsAffx.12906.1.S1_at--765--7831Chr03:10007927..10007951 (25 bp)
GGTACAAGAACCTGGCGTGGCTCGC
LOC_Os03g18020
OsAffx.12906.1.S1_at--887--7531Chr03:10007943..10007967 (25 bp)
GTGGCTCGCCGGAGGGTTCAGCAAG
LOC_Os03g18020
OsAffx.12906.1.S1_at--562--7891Chr03:10007957..10007981 (25 bp)
GGTTCAGCAAGTGCGTCGACGGCGA
LOC_Os03g18020
OsAffx.12906.1.S1_at--174--1371Chr03:10008002..10008026 (25 bp)
AGAGCAAGCTGCAGTATGCCACCGT
LOC_Os03g18020
OsAffx.12906.1.S1_at--383--2691Chr03:10008007..10008031 (25 bp)
AAGCTGCAGTATGCCACCGTGGGTG
LOC_Os03g18020
Target Sequence 
AAGTGGGTCCACTTCGGCTACATCGGCCTCTGGACCGGCCAGTCCTTCACCAAGATGAACGACCGCTTCCTCGACGACGT
CGCCGCCGCCGCCGGCGAAGGCAAGGACGCCAAGCTGCTCGTCGCCTGCGGCGAAGGCCTCCGGTCGTTGATCGCGGTGA
GGATGCTGTACGACGACGGGTACAAGAACCTGGCGTGGCTCGCCGGAGGGTTCAGCAAGTGCGTCGACGGCGACTTCGCC
GACGTGGAGGGGGAGAGCAAGCTGCAGTATGCCACCGTGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis