Browse Element(s) Details


OsAffx.12945.1.S1_at

Description tigr:9631.m01964
TID=OsAffx.12945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19780Os.23125.1.S1_at11/113+11111969..11113058expressed protein
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12945.1.S1_at--421--2171Chr03:11137281..11137305 (25 bp)
ACACCGAGTGCACCGAGGATGAGGA
LOC_Os03g19830
OsAffx.12945.1.S1_at--1064--2511Chr03:11137370..11137394 (25 bp)
AACTTCCTCAGCCTTCGCGAGGTCG
LOC_Os03g19830
OsAffx.12945.1.S1_at--330--7691Chr03:11137434..11137458 (25 bp)
GGGTGGTCTCGCGACGGACGTGGTT
LOC_Os03g19830
OsAffx.12945.1.S1_at--997--7491Chr03:11137436..11137460 (25 bp)
GTGGTCTCGCGACGGACGTGGTTGG
LOC_Os03g19830
OsAffx.12945.1.S1_at--83--9231Chr03:11137494..11137518 (25 bp)
TCCAGCCGTCGCTACGCATCATGGT
LOC_Os03g19830
OsAffx.12945.1.S1_at--234--3391Chr03:11137496..11137520 (25 bp)
CAGCCGTCGCTACGCATCATGGTCA
LOC_Os03g19830
OsAffx.12945.1.S1_at--1108--4491Chr03:11137498..11137522 (25 bp)
GCCGTCGCTACGCATCATGGTCAGG
LOC_Os03g19830
OsAffx.12945.1.S1_at--267--4251Chr03:11137499..11137523 (25 bp)
CCGTCGCTACGCATCATGGTCAGGT
LOC_Os03g19830
OsAffx.12945.1.S1_at--218--7231Chr03:11137501..11137525 (25 bp)
GTCGCTACGCATCATGGTCAGGTCG
LOC_Os03g19830
OsAffx.12945.1.S1_at--337--9351Chr03:11137502..11137526 (25 bp)
TCGCTACGCATCATGGTCAGGTCGA
LOC_Os03g19830
OsAffx.12945.1.S1_at--969--4111Chr03:11137503..11137527 (25 bp)
CGCTACGCATCATGGTCAGGTCGAC
LOC_Os03g19830
Target Sequence 
ACACCGAGTGCACCGAGGATGAGGAGGAGGAGGAGGAGCGCGAGAACCCCGCCGCCCTAGTGGCCACCGAGCCCCCTGCT
CCTGCCGCCAACTTCCTCAGCCTTCGCGAGGTCGCCACGGGCGCGGCCGGCGGCAAGTCCAAGAGGAAGAAGGGGGTGGT
CTCGCGACGGACGTGGTTGGGGAGGGGGCCCGTGTCGGAGGAGGAGGAGGAGCTCCAGCCGTCGCTACGCATCATGGTCA
GGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis