Browse Element(s) Details


OsAffx.12972.1.S1_at

Description tigr:9631.m02155
TID=OsAffx.12972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase C terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2158010/11hypothetical protein
LOC_Os08g372101/11Patatin-like phospholipase family protein, expressed
LOC_Os05g167401/11SHR5-receptor-like kinase, putative, expressed
LOC_Os12g323301/11peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os01g011101/11hypothetical protein
LOC_Os08g249001/11hypothetical protein
LOC_Os03g490001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0005778cellular_componentperoxisomal membrane
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12972.1.S1_at--240--8431Chr03:12304459..12304483 (25 bp)
GGCCTGACACATCATGCTAACCATT
LOC_Os03g21580
OsAffx.12972.1.S1_at--1067--571Chr03:12304446..12304470 (25 bp)
ATGCTAACCATTCTACGACGGCGCA
LOC_Os03g21580
OsAffx.12972.1.S1_at--266--9952Chr03:12304433..12304457 (25 bp)
TACGACGGCGCAATGCATGACGGCT
LOC_Os03g21580
OsAffx.12972.1.S1_at--322--4591Chr03:12304426..12304450 (25 bp)
GCGCAATGCATGACGGCTCTGCCCA
LOC_Os03g21580
OsAffx.12972.1.S1_at--84--8371Chr03:12304329..12304353 (25 bp)
GGCGGGACAGACAGACCAGACCATG
LOC_Os03g21580
OsAffx.12972.1.S1_at--934--1371Chr03:12304312..12304336 (25 bp)
AGACCATGGTCGAGCCTCCACGACG
LOC_Os03g21580
OsAffx.12972.1.S1_at--858--1871Chr03:12304287..12304311 (25 bp)
ACGAGGAGCTGATCCGGTTCACAAC
LOC_Os03g21580
OsAffx.12972.1.S1_at--261--6371NONE
GATCCGGTTCACAACAAGCCAAAAG
NONE
OsAffx.12972.1.S1_at--733--26511Chr09:4976898..4976917 (20 bp)
AAGCCAAAAGCTGGGTTTCTCAGCT
NONE
OsAffx.12972.1.S1_at--975--12562Chr12:19488694..19488733 (25 bp)
AGATTCTCAGCAGCTGCTTCTCAGA
LOC_Os12g32330
OsAffx.12972.1.S1_at--296--2391Chr03:12303380..12303404 (25 bp)
AAACAGGTCCTCAGCCAAGTTTCCG
LOC_Os03g21580
Target Sequence 
GGCCTGACACATCATGCTAACCATTCTACGACGGCGCAATGCATGACGGCTCTGCCCACCCGATGCCTTCCCCGGCGTGC
AACATGCCAGCCAGCGCCACCGGCCGGAGCGCACTGGGCGATTCCGCTCCGGCGGGACAGACAGACCAGACCATGGTCGA
GCCTCCACGACGACGAGGAGCTGATCCGGTTCACAACAAGCCAAAAGCTGGGTTTCTCAGCTTCTCCAGATTCTCAGCAG
CTGCTTCTCAGAATCTTAAGCTTCCCAAACAGGTCCTCAGCCAAGTTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis