Browse Element(s) Details


OsAffx.12979.1.S1_at

Description tigr:9631.m02175
TID=OsAffx.12979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2175011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21730Os.50062.1.S1_at11/113+12390108..12393951leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein
LOC_Os03g21770OsAffx.3290.1.S1_at11/113+12419496..12421543Protein kinase domain containing protein
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12979.1.S1_at--625--5911Chr03:12412385..12412461 (25 bp)
GAGCTAGTTGTCGCCGCGGAAAGTA
LOC_Os03g21750
OsAffx.12979.1.S1_at--787--3231Chr03:12412492..12412516 (25 bp)
CAAGAGCGTGAACCACTACGTTTCC
LOC_Os03g21750
OsAffx.12979.1.S1_at--46--9951Chr03:12412508..12412532 (25 bp)
TACGTTTCCCCGTTCTTGTGTGCAC
LOC_Os03g21750
OsAffx.12979.1.S1_at--220--7351Chr03:12412527..12412590 (25 bp)
GTGCACTTGAGTGGAGCTCGACGCC
LOC_Os03g21750
OsAffx.12979.1.S1_at--1127--8371Chr03:12412607..12412631 (25 bp)
GGCGAGCTTCGTGGCAGGATTTTTC
LOC_Os03g21750
OsAffx.12979.1.S1_at--395--4991Chr03:12412620..12412644 (25 bp)
GCAGGATTTTTCAGCGGGACGCCTT
LOC_Os03g21750
OsAffx.12979.1.S1_at--1080--3894Chr09:12371874..12371893 (20 bp)
CTGGTTCCAGGAGGTTGTCGCCGAT
NONE
OsAffx.12979.1.S1_at--309--4611Chr03:12412764..12412788 (25 bp)
GCGACGACGGAGACACTCCTGGGAA
LOC_Os03g21750
OsAffx.12979.1.S1_at--934--1411Chr03:12412774..12412798 (25 bp)
AGACACTCCTGGGAAGACGCGCTAC
LOC_Os03g21750
OsAffx.12979.1.S1_at--971--8532Chr03:12412812..12412836 (25 bp)
TGGACGCGCTACAGTCGTCGCCGTT
LOC_Os03g21750
OsAffx.12979.1.S1_at--668--9411Chr03:12412826..12412850 (25 bp)
TCGTCGCCGTTGACGGAGATCAGAC
LOC_Os03g21750
Target Sequence 
GAGCTAGTTGTCGCCGCGGAAAGTATCTCATCTACATGGGCGGTGGCGAGAGATGCAAGAGCGTGAACCACTACGTTTCC
CCGTTCTTGTGTGCACTTGAGTGGAGCTCGACGCCGCCACCGAGGGAGGCCGGCGAGCTTCGTGGCAGGATTTTTCAGCG
GGACGCCTTCTCCCGCGTCGCCGCCGCCGTCCTCATCTGCTCCCGCCGCTCCTTCGATGGTGCCCCGCGACGACGGTGCT
GGTTCCAGGAGGTTGTCGCCGATGGCGGCGGCGACGGCGACGGCGACGGCGACGACGGAGACACTCCTGGGAAGACGCGC
TACCGCCGCCGACGCGTGGACGCGCTACAGTCGTCGCCGTTGACGGAGATCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis