Browse Element(s) Details


OsAffx.13030.1.S1_x_at

Description tigr:9631.m02518
TID=OsAffx.13030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2570011/11hypothetical protein
LOC_Os11g228702/11hypothetical protein
LOC_Os12g220001/11hypothetical protein
LOC_Os09g069791/11
LOC_Os04g267101/11hypothetical protein
LOC_Os10g134701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein
LOC_Os03g25720Os.26725.1.S1_at10/113+14699870..14704030Hepatocellular carcinoma-associated antigen 59 family protein, expressed
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13030.1.S1_x_at--846--8333Chr10:7043345..7043369 (25 bp)
GGCTGCTATCAGTCCATGTATTCTT
LOC_Os10g13470
OsAffx.13030.1.S1_x_at--1160--434Chr03:14690854..14690878 (25 bp)
ATCTTATGAGTTCTACCATCCCATG
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--790--9971Chr03:14690867..14690891 (25 bp)
TACCATCCCATGAGCTCGGCTAGGC
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--195--4791Chr03:14690908..14690932 (25 bp)
GCTGCCAATCGGCTTCTATTTTGCC
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--349--9731Chr03:14690941..14690965 (25 bp)
TCAATGCAGAGGCAAAATCTCATCA
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--873--4191Chr03:14691003..14691027 (25 bp)
CCCCTTTGGGCAGCATCGATAATGT
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--77--7712Chr03:14691070..14691094 (25 bp)
GGGTGAATGGAAGCAGCACTTGTTC
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--983--2691Chr03:14691080..14691104 (25 bp)
AAGCAGCACTTGTTCCACCAATCGG
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--918--3731Chr03:14691351..14691375 (25 bp)
CTCAAGCCTACTCCAAGGGCAAATA
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--25--6191Chr03:14691402..14691426 (25 bp)
GAGGAAGACCAAGGCAACCCGTTGT
LOC_Os03g25700
OsAffx.13030.1.S1_x_at--158--8520Chr12:12181926..12181948 (23 bp)
AGGCAACCCGTTGTTCCCAGATGTT
NONE
Target Sequence 
GGCTGCTATCAGTCCATGTATTCTTCCTGTTGGCATCCATCAAGGGAGAAACATACAAGTATCTTATGAGTTCTACCATC
CCATGAGCTCGGCTAGGCAGTTTGGGATGGGACAGCTGCCAATCGGCTTCTATTTTGCCGATAAAATTCAATGCAGAGGC
AAAATCTCATCAACATTGATGATGGATCGACTGCTCAACATCCCAGGACCCCCTTTGGGCAGCATCGATAATGTAGAACT
AGCAAGGTTCAGGAGCACGAACTTTGACAAATGGTGGGGTGAATGGAAGCAGCACTTGTTCCACCAATCGGCTTCCATGT
ACATGACAGATCTATTCCCAGATGTTATCCCTCAGACAATAGAATCCTCTCCTCATCGCAAAAGCAATAGCGGCAAAGAC
ATAGAATATGCTCCAGGCCTTCTACTAAATGGAGGTGGTCTAGCTCCCCCTGTCATCGGCTGTTATGCCCCCAGGACCTC
AAGCCTACTCCAAGGGCAAATAAGAGAACCAGCCGATGCCGGTAGGAAGAGGAAGACCAAGGCAACCCGTTGTTCCCAGA
TGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13030.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis