Browse Element(s) Details


OsAffx.13083.1.S1_at

Description tigr:9631.m02746
TID=OsAffx.13083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative calmodulin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2779011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13083.1.S1_at--340--651Chr03:15916317..15916341 (25 bp)
ATGCAGAGCAATTATCAGTTCCCCT
LOC_Os03g27790
OsAffx.13083.1.S1_at--368--4291Chr03:15916295..15916319 (25 bp)
CCTCCTCCTATGACACTTGAAGAAT
LOC_Os03g27790
OsAffx.13083.1.S1_at--131--6231Chr03:15916205..15916229 (25 bp)
GAGGCCATCCGCAGCAAAGGTTTTG
LOC_Os03g27790
OsAffx.13083.1.S1_at--259--6831Chr03:15916179..15916203 (25 bp)
GTTTAGCGCCTGGTGGAAGAGTATT
LOC_Os03g27790
OsAffx.13083.1.S1_at--956--10831Chr03:15916156..15916180 (25 bp)
TTGTGGCTCTTCATCAGGCTGATAA
LOC_Os03g27790
OsAffx.13083.1.S1_at--994--8891Chr03:15916098..15916122 (25 bp)
TGAGAATCTTGTTACCTTTGCCCAG
LOC_Os03g27790
OsAffx.13083.1.S1_at--561--7591Chr03:15916068..15916089 (22 bp)
GGGCATCAAAATTACTACCTGGCAG
LOC_Os03g27790
OsAffx.13083.1.S1_at--771--2011Chr03:15915978..15916076 (25 bp)
ACTACCTGGCAGCAGCATTTGGATA
LOC_Os03g27790
OsAffx.13083.1.S1_at--715--2831Chr03:15915935..15915959 (25 bp)
AAGGTGTACTTGCAGTTACCAGTGT
LOC_Os03g27790
OsAffx.13083.1.S1_at--165--3471Chr03:15915916..15915940 (25 bp)
CAGTGTTTCTGTGCTGGCAGTTCAT
LOC_Os03g27790
OsAffx.13083.1.S1_at--238--5331Chr03:15915871..15915895 (25 bp)
GAAGTTGAAACTAAATCCCTTCATG
LOC_Os03g27790
Target Sequence 
ATGCAGAGCAATTATCAGTTCCCCTCCTCCTATGACACTTGAAGAATTCAAGAAGTGGTTCATGAAGTTCAACACCAACA
ATGATGGTCGCATAAGTGGAGTGGAGCTCCGTGAGGCCATCCGCAGCAAAGGTTTTGGGTTTAGCGCCTGGTGGAAGAGT
ATTGTGGCTCTTCATCAGGCTGATAAGGATAGAAATGGCTACATAGATGAATTCGAGATTGAGAATCTTGTTACCTTTGC
CCAGAAAGTGCTGGGCATCAAAATTACTACCTGGCAGCAGCATTTGGATAATGTGCAAAAAGCAGTAAAAGGTGTACTTG
CAGTTACCAGTGTTTCTGTGCTGGCAGTTCATTTTGATAATTATAATGAACAGAAGTTGAAACTAAATCCCTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis