Browse Element(s) Details


OsAffx.13092.1.S1_at

Description tigr:9631.m02788
TID=OsAffx.13092.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2818010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28160NANA3+16187906..16188593Jacalin-like lectin domain containing protein, expressed
LOC_Os03g28170Os.33673.1.A1_at8/113+16193255..16193966hypothetical protein
LOC_Os03g28180OsAffx.13092.1.S1_at10/113+16199098..16200700hypothetical protein
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13092.1.S1_at--833--751Chr03:16200040..16200064 (25 bp)
ATGTCAACTAGAGGTGAACACGCGC
LOC_Os03g28180
OsAffx.13092.1.S1_at--1084--10031Chr03:16200032..16200056 (25 bp)
TAGAGGTGAACACGCGCTTCGCGCA
LOC_Os03g28180
OsAffx.13092.1.S1_at--955--10631Chr03:16200015..16200039 (25 bp)
TTCGCGCACTGCACCAGTGGTGCCA
LOC_Os03g28180
OsAffx.13092.1.S1_at--231--3614Chr05:25114226..25114250 (25 bp)
CATTGATTACATCTGTTGGTTCTGG
NONE
OsAffx.13092.1.S1_at--543--2093Chr05:25114234..25114256 (23 bp)
ACATCTGTTGGTTCTGGTAGGTATG
NONE
OsAffx.13092.1.S1_at--1111--7354Chr05:25115109..25115133 (25 bp)
GTGAACCAAATAATGCACACAGCAG
NONE
OsAffx.13092.1.S1_at--392--3313Chr05:25115124..25115143 (20 bp)
CACACAGCAGCATATTTATTCAACA
NONE
OsAffx.13092.1.S1_at--702--5274Chr05:25115159..25115183 (25 bp)
GAATGGACGGTATTGTAGGATTGTA
NONE
OsAffx.13092.1.S1_at--341--9831NONE
TAAAGGGCAACGCTCATCGTCCTAA
NONE
OsAffx.13092.1.S1_at--73--395Chr05:25115401..25115425 (25 bp)
ATCGTCCTAAACTGAAGCTTTATCA
NONE
OsAffx.13092.1.S1_at--1107--5394Chr05:25115414..25115438 (25 bp)
GAAGCTTTATCATCCCAAACCAATA
NONE
Target Sequence 
ATGTCAACTAGAGGTGAACACGCGCTTCGCGCACTGCACCAGTGGTGCCAGGAGAGGGAAATCATTGATTACATCTGTTG
GTTCTGGTAGGTATGTGAACCAAATAATGCACACAGCAGCATATTTATTCAACAAAGAAAGTTGGAATGGACGGTATTGT
AGGATTGTAAAGGGCAACGCTCATCGTCCTAAACTGAAGCTTTATCATCCCAAACCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis