Browse Element(s) Details


OsAffx.13093.1.S1_x_at

Description tigr:9631.m02789
TID=OsAffx.13093.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2819011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28160NANA3+16187906..16188593Jacalin-like lectin domain containing protein, expressed
LOC_Os03g28170Os.33673.1.A1_at8/113+16193255..16193966hypothetical protein
LOC_Os03g28180OsAffx.13092.1.S1_at10/113+16199098..16200700hypothetical protein
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13093.1.S1_x_at--975--9211Chr03:16206838..16206862 (25 bp)
TCCACTTCTACATCCACGAGACGTT
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--453--10551Chr03:16206833..16206857 (25 bp)
TTCTACATCCACGAGACGTTCGCGG
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--1145--2091Chr03:16206829..16206853 (25 bp)
ACATCCACGAGACGTTCGCGGGCGA
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--862--9211Chr03:16206826..16206850 (25 bp)
TCCACGAGACGTTCGCGGGCGACAA
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--695--4471Chr03:16206761..16206785 (25 bp)
GCCGGCAGCAACTCGTCGTTCGGGA
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--415--3411Chr03:16206756..16206780 (25 bp)
CAGCAACTCGTCGTTCGGGAGCGTG
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--400--6711Chr03:16206744..16206768 (25 bp)
GTTCGGGAGCGTGGGCGCCCTGGAC
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--687--5774Chr11:10377271..10377640 (25 bp)
GACGAGCTCCGGGAGGGCTCGGACG
NONE
OsAffx.13093.1.S1_x_at--691--8351Chr03:16206693..16206717 (25 bp)
GGCGTCGCGGTACCTGGGCCGGGTG
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--452--5711Chr03:16206590..16206614 (25 bp)
GACTACAACGGGAGCACGCTGGTGC
LOC_Os03g28190
OsAffx.13093.1.S1_x_at--270--7811Chr03:16206481..16206505 (25 bp)
GGTACAGCCTCATGACCAAGTTCGG
LOC_Os03g28190
Target Sequence 
TCCACTTCTACATCCACGAGACGTTCGCGGGCGACAACGCCACCACGGCCTCCCTGGCGCCGTCCCCGCTCGCCGTCGCC
GGCAGCAACTCGTCGTTCGGGAGCGTGGGCGCCCTGGACGACGAGCTCCGGGAGGGCTCGGACGCGGCGTCGCGGTACCT
GGGCCGGGTGGAGGGCCTCGTCGTGCAGGCCGACCTGGGGAACCCGGCGGCGGCGTGGACGCTGCTGACCCTCGCCTTCG
CCGGCGGGGACTACAACGGGAGCACGCTGGTGCTGGACGGCCGCGTCGACTTCGGCGCCGCCGGCGACATGGAGCGCGCC
GTGGTGGGCGGCACGGGGAGGTTCCGGCGGGCGAGGGGGTACAGCCTCATGACCAAGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13093.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis