Browse Element(s) Details


OsAffx.13181.1.S1_x_at

Description tigr:9631.m03341
TID=OsAffx.13181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3402010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33980OsAffx.26189.1.A1_s_at3/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.29747.1.S1_at2/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.51594.1.S1_at1/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.54151.1.S1_x_at1/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33990NANA3+19348383..19348814retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34000NANA3+19350660..19351292retrotransposon protein, putative, unclassified, expressed
LOC_Os03g34020OsAffx.13181.1.S1_x_at10/113+19362883..19363563hypothetical protein
LOC_Os03g34030OsAffx.25359.1.S1_at11/113+19364092..19365773hypothetical protein
LOC_Os03g34030OsAffx.11259.1.S1_at2/113+19364092..19365773hypothetical protein
LOC_Os03g34040Os.14870.1.S1_at11/113+19367543..19371729ribosomal protein S5 containing protein, expressed
LOC_Os03g34054NANA3+19374910..19375434NA
LOC_Os03g34070OsAffx.25360.1.S1_at11/113+19376063..19378530hypothetical protein
LOC_Os03g34090NANA3+19381262..19381969hypothetical protein
LOC_Os03g34096NANA3+19384837..19386144hypothetical protein
LOC_Os03g34102OsAffx.16354.1.S1_x_at1/113+19386887..19388800hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13181.1.S1_x_at--498--4971Chr03:19362967..19362991 (25 bp)
GCACGGAGGCGAGCGGTTGGGCGGC
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--332--5311Chr03:19363048..19363072 (25 bp)
GAAGGAGCGGACGAGCGGCAGAGGC
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--605--3431Chr03:19363066..19363090 (25 bp)
CAGAGGCGCGGGAACACCGATGTTC
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--963--691Chr03:19363085..19363109 (25 bp)
ATGTTCGGTGGGTTTTCGGCGATGA
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--83--4051Chr03:19363104..19363128 (25 bp)
CGATGAGAAGTGGTGGCCGAGTTAC
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--379--4231Chr03:19363120..19363144 (25 bp)
CCGAGTTACGGTGGGATGCAAAGAT
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--406--7971NONE
GGATGCAAAGATGCCGAGTTACGCT
NONE
OsAffx.13181.1.S1_x_at--963--2791Chr03:19363140..19363272 (25 bp)
AAGATGCCGAGTTACGCTGGAGTGC
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--606--6391Chr03:19363369..19363393 (25 bp)
GATCGTTTATATGGGCTCGAAGCGG
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--324--4591Chr03:19363442..19363466 (25 bp)
GCGACATGGCCGGCATCGTTGTGGG
LOC_Os03g34020
OsAffx.13181.1.S1_x_at--693--6751Chr03:19363477..19363501 (25 bp)
GTTCAGCGGCAGTTTTTGGGGCTTA
LOC_Os03g34020
Target Sequence 
GCACGGAGGCGAGCGGTTGGGCGGCAGCCGGCGAAGCTCGGCGGAGGGAGTTGGCGATGCTCCGGCGATGGCGGCGCTCC
GGAAGGAGCGGACGAGCGGCAGAGGCGCGGGAACACCGATGTTCGGTGGGTTTTCGGCGATGAGAAGTGGTGGCCGAGTT
ACGGTGGGATGCAAAGATGCCGAGTTACGCTGGAGTGCGCCGGCGTGCGGCGGCGATGGGGATCGGCGTGGGGAGCTCAG
GAGAGGGTGCGGGGAGCTCAGGAAAATGGGGACAAGGGGAGAGGGAGCTCTGGGGATCGTTTATATGGGCTCGAAGCGGC
GGGATCGGGGCCGAGAGGGGCGGCAACCGACATCGACGTGGGCGGCGGCGACATGGCCGGCATCGTTGTGGGGGTGGCGG
CGGTTCAGCGGCAGTTTTTGGGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13181.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis