Browse Element(s) Details


OsAffx.13191.1.A1_at

Description gb:NM_184682.1
DB_XREF= gi:34896453
TID=OsAffx.13191.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0077G22.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g114281/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11400OsAffx.11264.1.S1_s_at3/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.20408.1.S1_at1/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11414Os.48040.1.A1_at11/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.14637.1.S1_at11/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.4301.1.S1_at8/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.4301.2.S1_at2/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11428Os.52834.1.S1_at8/115+6447454..6455768expressed protein
LOC_Os05g11428Os.55138.1.S1_x_at1/115+6447454..6455768expressed protein
LOC_Os05g11428OsAffx.13191.1.A1_at1/115+6447454..6455768expressed protein
LOC_Os05g11428Os.15238.1.S1_at1/115+6447454..6455768expressed protein
LOC_Os05g11442NANA5+6457140..6457629NA
LOC_Os05g11460OsAffx.4302.1.S1_at4/115+6463368..6465542hypothetical protein
LOC_Os05g11470OsAffx.4303.1.S1_at11/115+6469205..6470299hypothetical protein
LOC_Os05g11479NANA5+6471649..6473302NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13191.1.A1_at--477--3611Chr03:19856674..19856698 (25 bp)
CATTGGCCTTGCACGCGGATGCATG
NONE
OsAffx.13191.1.A1_at--253--651Chr03:19856656..19856680 (25 bp)
ATGCATGGTGCATGTTGCCGGACCA
NONE
OsAffx.13191.1.A1_at--1003--9176Chr11:5024742..5024765 (24 bp)
TGCCGGACCAGTTGATGGCGATGTC
NONE
OsAffx.13191.1.A1_at--280--9371Chr03:19856606..19856630 (25 bp)
TCGACGAGCACGCAAGCTGCAGCGA
NONE
OsAffx.13191.1.A1_at--76--8234Chr11:5024822..5024846 (25 bp)
GGCAGTACTTCCAGAGGCGGTCGAA
NONE
OsAffx.13191.1.A1_at--230--8231Chr03:19856530..19856554 (25 bp)
GGCAATCATCATCGCCACTGAGTAA
NONE
OsAffx.13191.1.A1_at--246--6072Chr03:19856511..19856535 (25 bp)
GAGTAAACCGATGCCGTGGTCATCC
NONE
OsAffx.13191.1.A1_at--611--2671Chr03:19856472..19856496 (25 bp)
AAGCGCGGCATCGTTGACGTAGCTC
NONE
OsAffx.13191.1.A1_at--950--751Chr03:19856420..19856444 (25 bp)
ATGTCACCGAGCATGCCATAGAAGC
NONE
OsAffx.13191.1.A1_at--397--1451Chr03:19856401..19856425 (25 bp)
AGAAGCCGACGAGGCTATGCGCCAT
NONE
OsAffx.13191.1.A1_at--116--8434Chr11:5025121..5025140 (20 bp)
GGCCTGGGTCGTAGTAGTAGCACAC
NONE
Target Sequence 
CATTGGCCTTGCACGCGGATGCATGGTGCATGTTGCCGGACCAGTTGATGGCGATGTCGGAGGCGCCGTCGACGAGCACG
CAAGCTGCAGCGAGCTACCCACCGGCGTAGGCGCGGCAGTACTTCCAGAGGCGGTCGAAGGCGGGGCAATCATCATCGCC
ACTGAGTAAACCGATGCCGTGGTCATCCTCCCCCTTCTGCCGAAGCGCGGCATCGTTGACGTAGCTCTCCGGGATGAGGT
CGCGGAGGCGGCGCATGTCACCGAGCATGCCATAGAAGCCGACGAGGCTATGCGCCATGGCGACGCAGGTGGGCCTGGGT
CGTAGTAGTAGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13191.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis