Browse Element(s) Details


OsAffx.13286.1.S1_at

Description tigr:9631.m03988
TID=OsAffx.13286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4148011/11hypothetical protein
LOC_Os03g316605/11Transposable element protein, putative, MuDR
LOC_Os01g234205/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os03g41530Os.49515.2.S1_x_at11/113+23047775..23050994Single-strand binding protein family protein, expressed
LOC_Os03g41540OsAffx.10665.1.S1_x_at9/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55476.1.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55138.1.S1_x_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540OsAffx.10665.2.S1_at1/113+23055080..23056298hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13286.1.S1_at--346--2113Chr11:21437348..21437368 (21 bp)
ACAGGAAATTCCGGGTGTGACAAGA
NONE
OsAffx.13286.1.S1_at--453--3231Chr03:23034320..23034344 (25 bp)
CAAGAGGGTTGATAGGCATGCTCGT
LOC_Os03g41480
OsAffx.13286.1.S1_at--807--8831Chr03:23034311..23034335 (25 bp)
TGATAGGCATGCTCGTGAGGATGAA
LOC_Os03g41480
OsAffx.13286.1.S1_at--196--3993Chr03:18035035..18035059 (25 bp)
CGTGAGGATGAAGCTAACTTGGCTC
LOC_Os03g31660
OsAffx.13286.1.S1_at--429--1532Chr03:18035046..18035070 (25 bp)
AGCTAACTTGGCTCAGGAGGAGGAT
LOC_Os03g31660
OsAffx.13286.1.S1_at--425--8871Chr03:23034248..23034272 (25 bp)
TGATGAGTACGAAGTCCAACCTGTT
LOC_Os03g41480
OsAffx.13286.1.S1_at--171--6093Chr03:18035089..18035109 (21 bp)
GAGTACGAAGTCCAACCTGTTCCAG
LOC_Os03g31660
OsAffx.13286.1.S1_at--915--7272Chr01:13139849..13139873 (25 bp)
GTCCAACCTGTTCCAGCATCATGGA
LOC_Os01g23420
OsAffx.13286.1.S1_at--1028--1513Chr03:18035112..18035136 (25 bp)
AGCATCATGGAACCGTGAAGATCTT
LOC_Os03g31660
OsAffx.13286.1.S1_at--92--5453Chr03:18035121..18035145 (25 bp)
GAACCGTGAAGATCTTGGATATATC
LOC_Os03g31660
OsAffx.13286.1.S1_at--485--231Chr03:23034194..23034218 (25 bp)
ATATATCGGAGAGAACGAGCTGCAG
LOC_Os03g41480
Target Sequence 
ACAGGAAATTCCGGGTGTGACAAGAGGGTTGATAGGCATGCTCGTGAGGATGAAGCTAACTTGGCTCAGGAGGAGGATGA
AGAGGCAGATGATGATGAGTACGAAGTCCAACCTGTTCCAGCATCATGGAACCGTGAAGATCTTGGATATATCGGAGAGA
ACGAGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis