Browse Element(s) Details


OsAffx.13377.1.S1_at

Description tigr:9631.m04479
TID=OsAffx.13377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4618011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13377.1.S1_at--129--5811Chr03:26069375..26069399 (25 bp)
GACGCTGTCGTCGTGCTGCTCCGAG
LOC_Os03g46180
OsAffx.13377.1.S1_at--177--3351Chr03:26069399..26069423 (25 bp)
GCTCCGGGCGTTCTTACGGTCCCAG
LOC_Os03g46180
OsAffx.13377.1.S1_at--125--1491Chr03:26069526..26069679 (25 bp)
AGCAACCCCTGCGATGATGTGGCCG
LOC_Os03g46180
OsAffx.13377.1.S1_at--1138--6251Chr03:26069670..26069694 (25 bp)
GATGTGGCCGCGAAAAGCTCTGAGC
LOC_Os03g46180
OsAffx.13377.1.S1_at--15--5451Chr03:26069775..26069799 (25 bp)
GAACCGGAGGCGTCAGAAGCACCGC
LOC_Os03g46180
OsAffx.13377.1.S1_at--289--1391Chr03:26069846..26069870 (25 bp)
AGACGCTGGATCGAGCGCTGGTTCA
LOC_Os03g46180
OsAffx.13377.1.S1_at--549--5871Chr03:26069858..26069882 (25 bp)
GAGCGCTGGTTCACAAGTTGCATCA
LOC_Os03g46180
OsAffx.13377.1.S1_at--296--4791Chr03:26069885..26069909 (25 bp)
GCTGCCAGAATTGCTGCATTCAGCA
LOC_Os03g46180
OsAffx.13377.1.S1_at--700--111Chr03:26069902..26069926 (25 bp)
ATTCAGCAGGTGTACGGAACTCCAG
LOC_Os03g46180
OsAffx.13377.1.S1_at--682--3951Chr03:26069916..26069940 (25 bp)
CGGAACTCCAGAAATATGGCTGCTG
LOC_Os03g46180
OsAffx.13377.1.S1_at--390--9111Chr03:26069936..26069960 (25 bp)
TGCTGCCGCTGTGATCACTCTGTTT
LOC_Os03g46180
Target Sequence 
GACGCTGTCGTCGTGCTGCTCCGAGCTCCGGGCGTTCTTACGGTCCCAGGGTCCGTGCCTCTGCGCCGCGTCCAGGCTCG
CCGCCGCCGGCCCGTTCGGCCTGTTCCTCGGCCAGGCGCAGGCCATCGTCCCCAACGTGTGCAACCTGCCCAGCAACCCC
TGCGATGATGTGGCCGCGAAAAGCTCTGAGCCGCGCTCCGCGACGCCGGCGGCACTGGCACCGGCCGCTGCACCGGACAC
GCCGGCGATGACACCGTCTGCGGCGCCGGCTGAACCGGAGGCGTCAGAAGCACCGCCGGTGCCAGCCGACGATTCTCCTG
CTGCCACCGTGACGGCGCCGGGAGACGCTGGATCGAGCGCTGGTTCACAAGTTGCATCAAAGCTGCCAGAATTGCTGCAT
TCAGCAGGTGTACGGAACTCCAGAAATATGGCTGCTGCCGCTGTGATCACTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis