Browse Element(s) Details


OsAffx.13405.1.S1_at

Description tigr:9631.m04712
TID=OsAffx.13405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g484109/11hypothetical protein
LOC_Os11g413902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48370OsAffx.3551.1.S1_at11/113+27485907..27492254NB-ARC domain containing protein
LOC_Os03g48380Os.38219.1.A1_at6/113+27495476..27499250expressed protein
LOC_Os03g48390Os.11496.1.S1_at6/113+27501330..27503409expressed protein
LOC_Os03g48400OsAffx.13404.1.S1_at11/113+27504978..27506238hypothetical protein
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein
LOC_Os03g48430OsAffx.3552.1.S1_at11/113+27530189..27531310oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g48440OsAffx.30514.1.S1_at10/113+27533058..27536297expressed protein
LOC_Os03g48440Os.56258.1.S1_at2/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28418.2.S1_x_at1/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28551.1.S1_at1/113+27533058..27536297expressed protein
LOC_Os03g48450Os.26916.1.S2_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S2_s_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S1_a_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.2.S1_at2/113+27537804..27541959GRAS family transcription factor containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13405.1.S1_at--684--7954Chr11:24339966..24339990 (25 bp)
GGATGCATTAGGCTGGCTGCTGGTG
LOC_Os11g41390
OsAffx.13405.1.S1_at--676--9133Chr11:24339989..24340013 (25 bp)
TGCTGGCGTGGCGTGTTAGAGCTGA
LOC_Os11g41390
OsAffx.13405.1.S1_at--1081--6771NONE
GTTAGAGCTGATGAAGCCGATAGTT
NONE
OsAffx.13405.1.S1_at--311--3871NONE
CTGATGAAGCCGATAGTTTGGAGGT
NONE
OsAffx.13405.1.S1_at--16--7671Chr03:27516979..27517003 (25 bp)
GGGATGCTAACACAGATTGGAGTAA
LOC_Os03g48410
OsAffx.13405.1.S1_at--1098--6591Chr03:27516965..27516989 (25 bp)
GATTGGAGTAAACCGTTCTATCTAT
LOC_Os03g48410
OsAffx.13405.1.S1_at--970--7031Chr03:27516958..27516982 (25 bp)
GTAAACCGTTCTATCTATGGGACAA
LOC_Os03g48410
OsAffx.13405.1.S1_at--196--2631Chr03:27516955..27516979 (25 bp)
AACCGTTCTATCTATGGGACAATGA
LOC_Os03g48410
OsAffx.13405.1.S1_at--442--5611Chr03:27516938..27516962 (25 bp)
GACAATGATCCAAGACCTCAAGAAC
LOC_Os03g48410
OsAffx.13405.1.S1_at--494--2031Chr03:27516915..27516939 (25 bp)
ACATGTTAAAGACGTACTTCCTGGG
LOC_Os03g48410
OsAffx.13405.1.S1_at--665--9811Chr03:27516910..27516934 (25 bp)
TTAAAGACGTACTTCCTGGGAAATG
LOC_Os03g48410
Target Sequence 
GGATGCATTAGGCTGGCTGCTGGTGCTGGCGTGGCGTGTTAGAGCTGATGAAGCCGATAGTTTGGAGGTGGTGGGGATGC
TAACACAGATTGGAGTAAACCGTTCTATCTATGGGACAATGATCCAAGACCTCAAGAACATGTTAAAGACGTACTTCCTG
GGAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis