Browse Element(s) Details


OsAffx.13433.1.S1_s_at

Description tigr:9631.m04897
TID=OsAffx.13433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5015011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13433.1.S1_s_at--704--7611Chr03:28552439..28552463 (25 bp)
GGGAATGGCTCATTTCCGAATCTCA
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--448--7031Chr03:28552485..28552509 (25 bp)
GTACAGAATTCCTTAGCACGGTTGA
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--97--3351Chr03:28552501..28552525 (25 bp)
CACGGTTGAGGTTATGGAGCATGCT
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--1068--9771Chr03:28552549..28552573 (25 bp)
TAAGGAAATGCCGTCAGTCCTGCCT
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--841--7111Chr03:28552561..28552585 (25 bp)
GTCAGTCCTGCCTGATGTTACAGAT
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--565--8791Chr03:28552576..28552600 (25 bp)
TGTTACAGATTTTTGCCACAGCAGA
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--208--3371Chr03:28552649..28552673 (25 bp)
CACCATTACTGCAAACACCGTTTAT
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--3--2651Chr03:28552769..28552793 (25 bp)
AACCATACAACGTTCCAGGAGAACA
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--752--5971Chr03:28552787..28552811 (25 bp)
GAGAACATGATCCAAAGCCAGGAGT
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--670--1691Chr03:28552802..28552826 (25 bp)
AGCCAGGAGTCCAGCACATGATAGC
LOC_Os03g50150
OsAffx.13433.1.S1_s_at--491--9071Chr03:28552840..28552864 (25 bp)
TGCTTGAGCTCAATGTAACCCAATT
LOC_Os03g50150
Target Sequence 
GGGAATGGCTCATTTCCGAATCTCACCCGCTTCTCCATCCACGACTGTACAGAATTCCTTAGCACGGTTGAGGTTATGGA
GCATGCTACAAGACTGCAAGTTCTGAAAATTAAGGAAATGCCGTCAGTCCTGCCTGATGTTACAGATTTTTGCCACAGCA
GAAACATCAACCTTATCAGCTGATCTGGCATCAAAGTTATGTATAGTTGACACCATTACTGCAAACACCGTTTATTTTTT
TATCTCGTTCCTTTTTAGTAAAATTCAGCTCAGGTTCTTCTGAGTTCTGATGGCAAGAAAAAAGAAGGCTTAGCTGATCT
GATGACAAGAAACCATACAACGTTCCAGGAGAACATGATCCAAAGCCAGGAGTCCAGCACATGATAGCTGTTTAATTTCT
TTGCTTGAGCTCAATGTAACCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13433.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis