Browse Element(s) Details


OsAffx.13558.1.S1_x_at

Description tigr:9631.m05931
TID=OsAffx.13558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6024011/11WH2 motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60190Os.27965.1.S1_at11/113+34173380..34177340oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g60200Os.25194.1.S1_at9/113+34177408..34180577pentatricopeptide, putative, expressed
LOC_Os03g60210OsAffx.3652.1.S1_at11/113+34181098..34182353expressed protein
LOC_Os03g60220Os.53258.1.S1_at11/113+34184028..34185132expressed protein
LOC_Os03g60230OsAffx.19542.3.S1_x_at3/113+34187150..34191058retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60250OsAffx.3653.1.S1_at11/113+34206776..34207432expressed protein
LOC_Os03g60260Os.50583.1.S1_at9/113+34210295..34212001Transmembrane amino acid transporter protein, expressed
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016337biological_processcell-cell adhesion
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0045010biological_processactin nucleation
GO:0051127biological_processpositive regulation of actin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13558.1.S1_x_at--980--5291Chr03:34205063..34205087 (25 bp)
GAAGGTTTCAGAACTTGTGGCCCCA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--88--10771Chr03:34205077..34205101 (25 bp)
TTGTGGCCCCAACTGATAAGTCAAA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--318--4491Chr03:34205247..34205271 (25 bp)
GCCGGTGAGTTCAGCTAAGCAGCCA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--1005--6111Chr03:34205488..34205512 (25 bp)
GAGTGACACATGAACGCGCACATTT
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--487--171Chr03:34205509..34205533 (25 bp)
ATTTTGCCCCATTTTTGTGGCTGGA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--957--5111Chr03:34205577..34205601 (25 bp)
GCACAGCCAATCTCATCTTTTGGAT
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--661--6491Chr03:34205599..34205623 (25 bp)
GATAGCGTTGCTAGTCTTGTGTATA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--451--6891Chr03:34205624..34205648 (25 bp)
GTATATGCCCATACATCTTGTCTTT
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--768--9051Chr03:34205652..34205676 (25 bp)
TGCATTCTTTTAGCCCGCATTTGTA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--18--10271Chr03:34205671..34205695 (25 bp)
TTTGTATGTATACTTTCCTCTCCCA
LOC_Os03g60240
OsAffx.13558.1.S1_x_at--728--4771Chr03:34205705..34205729 (25 bp)
GCTGCTGATGGTAGTCATGTTCCGA
LOC_Os03g60240
Target Sequence 
GAAGGTTTCAGAACTTGTGGCCCCAACTGATAAGTCAAAACCTAATGAAAGAAACCTGTTGCTAGAGCAGATAAGGAACA
AGACCTTCAACCTGAAGCCGGTGAGTTCAGCTAAGCAGCCAACAATCAGAACCCCTCCTAGAGCCTCAACAAGGAACTTG
AAAGTTGCTGCCATAATAGAGAAAGCGAACGCCATACGACAGGCGGTTGGAAGCGACGATGAAGACGGAGATAATTGGAG
TGAATCGAGTGACACATGAACGCGCACATTTTGCCCCATTTTTGTGGCTGGAAGGTGCCGAAACTTCACGAAGCTCCTGC
CTTCCTGGACAGGCTGCACAGCCAATCTCATCTTTTGGATAGCGTTGCTAGTCTTGTGTATAGTATATGCCCATACATCT
TGTCTTTTTTTGCATTCTTTTAGCCCGCATTTGTATGTATACTTTCCTCTCCCAGCAGCAAAGGCTGCTGATGGTAGTCA
TGTTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13558.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis