Browse Element(s) Details


OsAffx.13575.1.S1_at

Description tigr:9631.m06122
TID=OsAffx.13575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6200011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13575.1.S1_at--906--2051Chr03:35077241..35077265 (25 bp)
ACTTGACCATGTGGAGACAGCTCCC
LOC_Os03g62000
OsAffx.13575.1.S1_at--475--6891Chr03:35077179..35077203 (25 bp)
GTATCTGGCACACCCGCAACGAAAT
LOC_Os03g62000
OsAffx.13575.1.S1_at--960--3051Chr03:35077157..35077181 (25 bp)
AATCACGCACGGTAAGCATGCCCAT
LOC_Os03g62000
OsAffx.13575.1.S1_at--925--3691Chr03:35077131..35077155 (25 bp)
CTATCGCGGCGTCAAAGAGGTTCAT
LOC_Os03g62000
OsAffx.13575.1.S1_at--104--751Chr03:35077098..35077122 (25 bp)
ATGTCTCGTCTTTGCAGGAAATTAA
LOC_Os03g62000
OsAffx.13575.1.S1_at--1052--10391Chr03:35076986..35077010 (25 bp)
TTTTGTTCACAGATGGAGACCGCCA
LOC_Os03g62000
OsAffx.13575.1.S1_at--1070--1531Chr03:35076945..35076969 (25 bp)
AGCTTAATACAGATGGGTCCTTCCA
LOC_Os03g62000
OsAffx.13575.1.S1_at--382--7711Chr03:35076931..35076955 (25 bp)
GGGTCCTTCCAAGCTGAAGCAGGAA
LOC_Os03g62000
OsAffx.13575.1.S1_at--1151--1091Chr03:35076893..35076917 (25 bp)
AGTGGTGCTCAGGAACTGCCATGGA
LOC_Os03g62000
OsAffx.13575.1.S1_at--567--5591Chr03:35076868..35076892 (25 bp)
GAAATCATTTTCTCTGCGTGTGGCT
LOC_Os03g62000
OsAffx.13575.1.S1_at--1073--8651Chr03:35076850..35076874 (25 bp)
TGTGGCTTCCTGCAGAGGACGTCAA
LOC_Os03g62000
Target Sequence 
ACTTGACCATGTGGAGACAGCTCCCTCAGGCGATCGGGCTTTGGTGATGATGATACTGTGGCGTATCTGGCACACCCGCA
ACGAAATCACGCACGGTAAGCATGCCCATGCTATCGCGGCGTCAAAGAGGTTCATAGAGAGCTATGTCTCGTCTTTGCAG
GAAATTAAACAGTGGCCGAATGCAAATCTGGAGAAGGGGAAACATGTTGTGGATGCGAAACAATGGAAAAAGCCTAGGGC
GAGCCAGGGAGATGGTTTTGTTCACAGATGGAGACCGCCAGAACAGGGCTGGATGAAGCTTAATACAGATGGGTCCTTCC
AAGCTGAAGCAGGAAATGGAGGAATAGGAGTGGTGCTCAGGAACTGCCATGGAGAAATCATTTTCTCTGCGTGTGGCTTC
CTGCAGAGGACGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis