Browse Element(s) Details


OsAffx.13622.1.S1_at

Description tigr:9632.m00157
TID=OsAffx.13622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0252011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein
LOC_Os04g02539NANA4+928966..929187NA
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13622.1.S1_at--382--9171Chr04:914048..914069 (22 bp)
TGCCCAGAGGTTCCATGCTCAGTGA
LOC_Os04g02520
OsAffx.13622.1.S1_at--711--9091Chr04:912803..912823 (21 bp)
TGCTCAGTGATATGATACTCTGTTT
LOC_Os04g02520
OsAffx.13622.1.S1_at--705--6471Chr04:912790..912814 (25 bp)
GATACTCTGTTTTGAAGTGAAACCT
LOC_Os04g02520
OsAffx.13622.1.S1_at--357--2851Chr04:912776..912800 (25 bp)
AAGTGAAACCTTCTGCAATATTGCA
LOC_Os04g02520
OsAffx.13622.1.S1_at--947--5191Chr04:912762..912786 (25 bp)
GCAATATTGCAGTGGAGAGTGGCAT
LOC_Os04g02520
OsAffx.13622.1.S1_at--448--8531Chr04:912750..912774 (25 bp)
TGGAGAGTGGCATGCAGTAAGATTT
LOC_Os04g02520
OsAffx.13622.1.S1_at--919--3471Chr04:912345..912369 (25 bp)
CAGGAAACATTGGATCTTGCTAGAG
LOC_Os04g02520
OsAffx.13622.1.S1_at--139--2511Chr04:912340..912364 (25 bp)
AACATTGGATCTTGCTAGAGAAGCC
LOC_Os04g02520
OsAffx.13622.1.S1_at--130--10031Chr04:912325..912349 (25 bp)
TAGAGAAGCCATTAGTTATACGAGT
LOC_Os04g02520
OsAffx.13622.1.S1_at--564--5051Chr04:912296..912320 (25 bp)
GCAGCAGGTCGAGAAGCTTGGCAAC
LOC_Os04g02520
OsAffx.13622.1.S1_at--458--5971Chr04:912286..912310 (25 bp)
GAGAAGCTTGGCAACATGTAGGCTG
LOC_Os04g02520
Target Sequence 
TGCCCAGAGGTTCCATGCTCAGTGATATGATACTCTGTTTTGAAGTGAAACCTTCTGCAATATTGCAGTGGAGAGTGGCA
TGCAGTAAGATTTGGGGTGTATCCCAGGAAACATTGGATCTTGCTAGAGAAGCCATTAGTTATACGAGTAGAAGCAGCAG
GTCGAGAAGCTTGGCAACATGTAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis