Browse Element(s) Details


OsAffx.13631.4.S1_s_at

Description tigr:9640.m02893
TID=OsAffx.13631.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0300011/11hAT family dimerisation domain containing protein
LOC_Os01g1921011/11retrotransposon protein, putative, unclassified
LOC_Os12g2997011/11hAT family dimerisation domain containing protein
LOC_Os02g2595011/11hAT family dimerisation domain containing protein
LOC_Os01g1419011/11hAT family dimerisation domain containing protein
LOC_Os07g3423011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02960OsAffx.10637.1.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.3.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.4.S1_s_at8/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.19542.3.S1_x_at3/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.9949.1.S1_at1/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02970OsAffx.25846.1.S1_s_at11/114+1188292..1190004Cucumisin precursor, putative, expressed
LOC_Os04g02980OsAffx.25853.1.S1_at11/114+1196587..1206116Subtilisin N-terminal Region family protein
LOC_Os04g02990OsAffx.3706.1.S1_at11/114+1208003..1208519subtilisin-like protease, putative
LOC_Os04g03000OsAffx.13631.4.S1_s_at11/114+1208996..1211441hAT family dimerisation domain containing protein
LOC_Os04g03010NANA4+1213583..1214698hypothetical protein
LOC_Os04g03020OsAffx.13632.1.S1_at11/114+1216992..1220535hypothetical protein
LOC_Os04g03030OsAffx.25936.1.S1_s_at9/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.7.S1_s_at8/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.2.S1_x_at4/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.5.S1_x_at2/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.10827.1.S1_x_at9/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.46055.2.S1_x_at5/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03050OsAffx.25847.1.S1_at10/114+1235580..1238644Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13631.4.S1_s_at--648--2316Chr12:17883473..17883497 (25 bp)
AAAGGTGCTGAAATGCATGTGCATC
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--727--6376Chr12:17883515..17883539 (25 bp)
GATCCTGTTCATAATACTGATGAGT
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--1125--10276Chr12:17883601..17883625 (25 bp)
TTTGCTTGAGAGAAGTCAGCCAATT
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--63--836Chr12:17883656..17883680 (25 bp)
ATGGAACAACCACTGTTACTATGGA
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--843--3416Chr12:17883729..17883753 (25 bp)
CAGAATTTCCTATCCTCTGCAAACT
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--742--6536Chr12:17883761..17883785 (25 bp)
GATTTCTTATGTATTCAAGTGTCAA
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--766--10716Chr12:17883789..17883813 (25 bp)
TTGCTTCTGAGTCGGCATTTAGTGC
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--616--8816Chr12:17883823..17883847 (25 bp)
TGTTGTTGATCCATTTCGCACCCGT
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--116--10296Chr12:17883836..17883860 (25 bp)
TTTCGCACCCGTCTTGATCCAGAGG
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--1069--5556Chr12:17884051..17884075 (25 bp)
GAAAGCGTAGAGAGGCATCTGGCAA
LOC_Os12g29970
OsAffx.13631.4.S1_s_at--101--6216Chr12:17884062..17884086 (25 bp)
GAGGCATCTGGCAAACTTATTGATA
LOC_Os12g29970
Target Sequence 
AAAGGTGCTGAAATGCATGTGCATCAACTTCAAATTCAATCTGATCCTGTTCATAATACTGATGAGTTTGATGATATCTT
TAATGAGAATGACAGTAGCCATGATCATGAGCAACATCTTCAAAGATTTTTGCTTGAGAGAAGTCAGCCAATTTGTAGTG
ATAAAACCGAGTTACAAATTTACATGGAACAACCACTGTTACTATGGACTTCCAAAGATCCATTTGATATTTTGTCTTGG
TGGAAGCTCAAACAAGCAGAATTTCCTATCCTCTGCAAACTTGCTCGTGATTTCTTATGTATTCAAGTGTCAACTGTTGC
TTCTGAGTCGGCATTTAGTGCTGGTGGCCGTGTTGTTGATCCATTTCGCACCCGTCTTGATCCAGAGGCTGTGCAAGCTT
TAGTTTGCACCAAAGATTGGATTAAAGCAGCTAACAATGGTTATAAGACTCAGGCTATTATCAATGAGTTGGACATTGAA
AGCGTAGAGAGGCATCTGGCAAACTTATTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13631.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis