Browse Element(s) Details


OsAffx.25847.1.S1_at

Description tigr:9632.m00212
TID=OsAffx.25847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cucumisin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0305010/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03000OsAffx.13631.4.S1_s_at11/114+1208996..1211441hAT family dimerisation domain containing protein
LOC_Os04g03010NANA4+1213583..1214698hypothetical protein
LOC_Os04g03020OsAffx.13632.1.S1_at11/114+1216992..1220535hypothetical protein
LOC_Os04g03030OsAffx.25936.1.S1_s_at9/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.7.S1_s_at8/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.2.S1_x_at4/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.5.S1_x_at2/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.10827.1.S1_x_at9/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.46055.2.S1_x_at5/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03050OsAffx.25847.1.S1_at10/114+1235580..1238644Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_s_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03080OsAffx.25853.3.S1_at10/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29410.1.S1_at8/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.13325.1.S1_at2/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29576.5.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_x_at1/114+1253208..1256989subtilase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25847.1.S1_at--716--6731Chr04:1235627..1235651 (25 bp)
GTTCTTGCTGCAATTGCCATGGTCA
LOC_Os04g03050
OsAffx.25847.1.S1_at--750--811Chr04:1235645..1235669 (25 bp)
ATGGTCATCGCATGCTCTTAAGCAG
LOC_Os04g03050
OsAffx.25847.1.S1_at--70--631Chr04:1235656..1235680 (25 bp)
ATGCTCTTAAGCAGGGCGAACCACC
LOC_Os04g03050
OsAffx.25847.1.S1_at--278--5431NONE
GAACCACCCACGAAGCTATACATTG
NONE
OsAffx.25847.1.S1_at--424--6111Chr04:1237286..1237310 (25 bp)
GAGTCCATCGTATACAGCTATAGGT
LOC_Os04g03050
OsAffx.25847.1.S1_at--188--3311Chr04:1237347..1237368 (22 bp)
CACAAGCGAGCATCATCCGAGGGTT
LOC_Os04g03050
OsAffx.25847.1.S1_at--118--3531Chr04:1237360..1237493 (25 bp)
CATCCGAGGGTTGCCTGATGTGGTC
LOC_Os04g03050
OsAffx.25847.1.S1_at--237--7111Chr04:1237491..1237515 (25 bp)
GTCAGCGTGAGAGAGAACCATATCC
LOC_Os04g03050
OsAffx.25847.1.S1_at--962--9231Chr04:1237513..1237537 (25 bp)
TCCATCAATTGCATACCAGTCGAAG
LOC_Os04g03050
OsAffx.25847.1.S1_at--248--10291Chr04:1237544..1237568 (25 bp)
TTTCCTTGGAATGGACTACAGGCAA
LOC_Os04g03050
OsAffx.25847.1.S1_at--260--2651Chr04:1237567..1237591 (25 bp)
AACCAAATGGCCTGCTTGCCAAAGC
LOC_Os04g03050
Target Sequence
GTTCTTGCTGCAATTGCCATGGTCATCGCATGCTCTTAAGCAGGGCGAACCACCCACGAAGCTATACATTGTCTACCTTG
GGGAGAGAAGACACGATGATGCTGATCTCGTCACTGATTCCCACCATGACATGCTTGCCTCTGTTTTGGGAAGCAAGGAG
GCGGCTCTTGAGTCCATCGTATACAGCTATAGGTACAGTTTCTCTGGCTTTGCTGCAAGGCTCACAAAAGCACAAGCGAG
CATCATCCGAGGGTTGCCTGATGTGGTCAGCGTGAGAGAGAACCATATCCATCAATTGCATACCAGTCGAAGCTGGGATT
TCCTTGGAATGGACTACAGGCAACCAAATGGCCTGCTTGCCAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis